Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_J13
         (461 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein L22|Schizosa...    48   5e-07
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    26   2.4  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   2.4  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    24   9.8  
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    24   9.8  

>SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein
           L22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 48.4 bits (110), Expect = 5e-07
 Identities = 22/41 (53%), Positives = 27/41 (65%)
 Frame = +2

Query: 110 DCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVVAR 232
           D T    D I DV  FEKYL + +KV+GKT NL + VVV+R
Sbjct: 15  DATAAVNDKIFDVAAFEKYLIDRIKVDGKTGNLGSSVVVSR 55



 Score = 30.3 bits (65), Expect = 0.15
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +3

Query: 210 AITLSSPGXKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLXVVASAHDAXELRYF 383
           ++ +S  G  +K+A+ A I FS                  DWL VV++     ELRY+
Sbjct: 50  SVVVSREG-SSKIAVIAHIDFSGRYLKYLTKKFLKKHSLRDWLRVVSTKKGVYELRYY 106


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = +2

Query: 143  DVGNFEKYLKEHVKVEGKTNNLSNHVVVARX*DESRYHRRHSFFKEVPE 289
            + GN +KY + ++KV GK ++   H       ++S+    +  F +V +
Sbjct: 955  EAGNLKKYDQPNLKVSGKNDSFVTHHTPGAFPNDSKNKELNRHFLKVDD 1003


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +2

Query: 101 LQXDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNL 208
           L+ DC +  + ++  + N +K + +HV  E K + L
Sbjct: 820 LKTDCENLTQQNMTLIDNVQKLMHKHVNQESKVSEL 855


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 98  NLQXDCTHPAEDSILDVGNFEKYLKEHVKVEGK 196
           N+  +  H A D +  V + ++ L++H K EGK
Sbjct: 83  NVSKNNGHKASDIVDAVSSKDEELRKHAKGEGK 115


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 295 KYFRYLFEKGMSAVIATFVL 236
           K+FRY+F   ++ ++  FVL
Sbjct: 198 KWFRYIFRVSVAVILLDFVL 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,447,344
Number of Sequences: 5004
Number of extensions: 21899
Number of successful extensions: 57
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)