Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_J13
         (461 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1662 + 28447419-28447666,28448429-28448573                       45   3e-05
03_02_0963 - 12769715-12769859,12770639-12770889                       44   8e-05
04_04_0824 - 28399144-28399385,28400193-28400312,28400422-284004...    27   7.3  

>07_03_1662 + 28447419-28447666,28448429-28448573
          Length = 130

 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
 Frame = +2

Query: 110 DCTHPAEDSILDVGNFEKYLKEHVKVE-GKTNNLSNHVVVAR 232
           DC+ P ED I+++ + EK+L+E +KV  GK  NL + V V R
Sbjct: 26  DCSKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVTR 67


>03_02_0963 - 12769715-12769859,12770639-12770889
          Length = 131

 Score = 43.6 bits (98), Expect = 8e-05
 Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = +2

Query: 110 DCTHPAEDSILDVGNFEKYLKEHVKVE-GKTNNLSNHVVVAR 232
           DC  P +D I+++ + EK+L+E +KV  GK  NL   V V+R
Sbjct: 27  DCAKPVDDKIMEIASLEKFLQERIKVAGGKAGNLGESVTVSR 68



 Score = 36.3 bits (80), Expect = 0.012
 Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +3

Query: 237 KTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLXVVASAHD--AXELRYF 383
           KTKV +T+D PFS                  DWL V+AS  D    ELRYF
Sbjct: 70  KTKVTVTSDGPFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYF 120


>04_04_0824 -
           28399144-28399385,28400193-28400312,28400422-28400453,
           28400531-28400625,28400713-28400786,28400883-28401018,
           28401096-28401333,28401508-28401555,28401593-28401780,
           28401862-28401983,28402061-28402226,28402321-28402443,
           28403068-28403139,28403244-28403351,28404212-28404328,
           28404458-28404596,28404702-28404808,28404904-28405013,
           28405141-28405274,28405348-28405497,28405571-28405791,
           28405868-28406677,28410261-28410473
          Length = 1254

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 67  RGFCHPSLLFCQSSGAXWA 11
           RGFCH   + CQ SG  +A
Sbjct: 753 RGFCHELAIMCQISGMDFA 771


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,502,446
Number of Sequences: 37544
Number of extensions: 143673
Number of successful extensions: 324
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)