Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_J13
         (461 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58760-2|AAK31460.1|  130|Caenorhabditis elegans Ribosomal prote...    40   0.001
AJ277649-1|CAB90211.1|  917|Caenorhabditis elegans CHE-14 protei...    28   3.7  
AF067618-5|AAC19198.2|  917|Caenorhabditis elegans Abnormal chem...    28   3.7  

>U58760-2|AAK31460.1|  130|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 22, isoform a protein.
          Length = 130

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
 Frame = +2

Query: 110 DCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNL-SNHVVV 226
           +C +P ED IL + + E +L E +KV GKT +L +N+V V
Sbjct: 26  ECKNPVEDGILRIEDLEAFLNEKIKVNGKTGHLAANNVKV 65



 Score = 34.3 bits (75), Expect = 0.043
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 237 KTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLXVVASAHDAXELRYF 383
           K+KV++ +++PFS                  DWL VVA   +  E+RYF
Sbjct: 69  KSKVSVVSEVPFSKRYLKYLTKKYLKRNSLRDWLRVVAVNKNTYEVRYF 117


>AJ277649-1|CAB90211.1|  917|Caenorhabditis elegans CHE-14 protein
           protein.
          Length = 917

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -1

Query: 116 CSRXVNFKLIFRLMPLPRILPPF--TPFLPVF 27
           CS  + + L +RL+P  R   PF    FLPVF
Sbjct: 241 CSSQIMYDLFYRLLPKQRDDTPFLVNTFLPVF 272


>AF067618-5|AAC19198.2|  917|Caenorhabditis elegans Abnormal
           chemotaxis protein 14 protein.
          Length = 917

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -1

Query: 116 CSRXVNFKLIFRLMPLPRILPPF--TPFLPVF 27
           CS  + + L +RL+P  R   PF    FLPVF
Sbjct: 241 CSSQIMYDLFYRLLPKQRDDTPFLVNTFLPVF 272


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,166,801
Number of Sequences: 27780
Number of extensions: 126715
Number of successful extensions: 272
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)