Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_J13
         (461 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    21   6.5  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   6.5  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   6.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.5  

>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 98  FKLIFRLMPLPRILPP 51
           F+ I  L P PR +PP
Sbjct: 145 FRHIGPLTPFPRFIPP 160


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 98  FKLIFRLMPLPRILPP 51
           F+ I  L P PR +PP
Sbjct: 386 FRHIGPLTPFPRFIPP 401


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 251 YHRRHSFFKEVPEVFNKTLPQ 313
           ++R H+F  +V +    TLPQ
Sbjct: 401 FYRWHAFVDDVFQEHKNTLPQ 421


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -2

Query: 64  GFCHPSLLFCQSSGAXWAF 8
           GFC   L+F +     WAF
Sbjct: 452 GFCLLFLMFFECIAISWAF 470


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -2

Query: 64  GFCHPSLLFCQSSGAXWAF 8
           GFC   L+F +     WAF
Sbjct: 505 GFCLLFLMFFECIAISWAF 523


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,557
Number of Sequences: 438
Number of extensions: 1592
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12312900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)