Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_J07
(478 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe... 46 4e-06
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 36 0.003
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 29 0.28
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 27 1.9
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 26 2.6
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 26 2.6
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 26 3.4
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 26 3.4
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 25 4.5
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 5.9
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 5.9
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po... 25 7.9
SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 25 7.9
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.9
>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 560
Score = 45.6 bits (103), Expect = 4e-06
Identities = 21/47 (44%), Positives = 28/47 (59%)
Frame = +3
Query: 327 VVQFTVKHEQDIDCGGGYLKVFDCKLXXKDMHGETPYXIMFGPDICG 467
VVQ+ V E+ ++CGG YLK+ + +M Y IMFGPD CG
Sbjct: 119 VVQYEVNPEEGLNCGGAYLKLL-AEPTHGEMSNSIDYRIMFGPDKCG 164
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 35.9 bits (79), Expect = 0.003
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = -2
Query: 273 NLASSEVFKPLSSSGSLKNFPAVNLNFPNSFPGCSLYTQLLSHE-SSGNFSSKNTSQFIE 97
N SSE F S+S SL P VN + S + ++ L S + S+ NF+S ++S +
Sbjct: 475 NYTSSEAF---STSSSLVVIPPVNSSLVTSSTSFTKFSSLSSSQLSTENFTSASSSLSLT 531
Query: 96 DNASKLTTTSTT 61
+ S L+T STT
Sbjct: 532 NAKSSLSTPSTT 543
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 29.5 bits (63), Expect = 0.28
Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Frame = -2
Query: 204 NLNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQFIEDNASKLTT----TSTTAFIFDSQY 37
N N F + + S +SGNFS T Q DN S +T ST F S
Sbjct: 575 NSNSQRPFSTVPSESNVFSRNASGNFSMSQTHQPTTDNTSSFSTQPGRLSTGLHHFPSDR 634
Query: 36 HLLQTKDR 13
LL + R
Sbjct: 635 DLLSNQTR 642
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 26.6 bits (56), Expect = 1.9
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +2
Query: 209 AGKFFSDPEDDKGLKTSEDARFYALSRKFKPFSNEGKPLGSP 334
A F S E KGL +SE Y+L P SN+ + L SP
Sbjct: 263 ADSFLSHSESIKGLSSSEQGTVYSLKASHDP-SNQTQ-LSSP 302
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 26.2 bits (55), Expect = 2.6
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 273 NLASSEVFKPLSSSGSLKNFPAVNLNFPNSFP 178
N +E F+P + SL N P +N ++ ++ P
Sbjct: 685 NSTPNEAFQPFDQTSSLYNVPGLNKSYVSNQP 716
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 26.2 bits (55), Expect = 2.6
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = +2
Query: 125 EKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDA 268
+ F +D + +W EH K ++ + + FS+ DD+ + SE +
Sbjct: 49 QAFQEDEGDEDWEEEEHKPKAKRRYNTRSNESFSE-GDDEPFEVSESS 95
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 25.8 bits (54), Expect = 3.4
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = -2
Query: 297 LNLRERA*NLASSEV----FKPLSSSGSLKNFPAVNLNFPNSFPGCSLYTQLLSHESS 136
++LR RA L+ E+ + LS+ LK +++ FP SFP +Y + ++SS
Sbjct: 121 VDLRMRAIFLSIDEISMICIRILSAEERLKTGRSIDSGFPFSFPVHLIYDMCILNDSS 178
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 3.4
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 122 EEKFPDDSWESNWVYS 169
EEKFPD +W +W S
Sbjct: 251 EEKFPDIAWRVSWSLS 266
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 25.4 bits (53), Expect = 4.5
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -3
Query: 167 CTPNCFPTNHQETSPQRIHHNLSKIMPAS*Q 75
C P FP N+QE H+ I AS Q
Sbjct: 791 CKPESFPANYQEVLDYYTHNGFRVIACASKQ 821
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 5.9
Identities = 18/71 (25%), Positives = 35/71 (49%)
Frame = -2
Query: 267 ASSEVFKPLSSSGSLKNFPAVNLNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQFIEDNA 88
+SS LSS S + + + ++F S ++ SH SS + SS ++ + ++
Sbjct: 395 SSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHNSTSSRSSSHSSSHSLSSLSSKPILTASS 454
Query: 87 SKLTTTSTTAF 55
S L T+S+ +
Sbjct: 455 SSLLTSSSHTY 465
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.0 bits (52), Expect = 5.9
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Frame = -3
Query: 149 PTNHQETS---PQRIHHNLSKIMPAS*QRPVQQLSFSIHSTTF 30
PT H T+ P H N + +P + + + ++ ++TTF
Sbjct: 136 PTTHVNTTTVVPPTTHANTTSFVPTTTESSIHPITTGFYNTTF 178
>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 472
Score = 24.6 bits (51), Expect = 7.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 319 FTLITERFELTGESIEPRIFRGFQT 245
F E FELTG + IF+ FQ+
Sbjct: 77 FMSFLENFELTGRPVVGTIFKYFQS 101
>SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 335
Score = 24.6 bits (51), Expect = 7.9
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -2
Query: 192 PNSFPGCSLYTQLLSHESSGNFSSKNTSQFIEDNAS 85
PN P ++ Q ++ ++S F N S ++ DN S
Sbjct: 169 PNMPPKTTVNDQDVTKDASQQFGGSNFSNYLRDNDS 204
>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 24.6 bits (51), Expect = 7.9
Identities = 23/77 (29%), Positives = 37/77 (48%)
Frame = -2
Query: 273 NLASSEVFKPLSSSGSLKNFPAVNLNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQFIED 94
N ASS V + S + NF F N P SL Q L+ S+ S ++T ++
Sbjct: 106 NFASSSVTSAPTQSSHISNFTNSQKYFANDLPN-SLTDQPLAQPSA---SQRST--WLPC 159
Query: 93 NASKLTTTSTTAFIFDS 43
+A+ T++ ++ FDS
Sbjct: 160 SAAVSTSSPSSDPFFDS 176
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,074,624
Number of Sequences: 5004
Number of extensions: 41448
Number of successful extensions: 129
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -