Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_J07
(478 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0971 + 8169197-8169311,8170351-8170458,8170533-8170725,817... 75 2e-14
03_06_0563 - 34738732-34738890,34738965-34739009,34739154-347392... 73 9e-14
01_06_1654 - 38924090-38924101,38924183-38924215,38924737-389248... 73 2e-13
05_06_0014 + 24854462-24854570,24854958-24855065,24855240-248554... 70 1e-12
04_03_0812 - 19922208-19922357,19922448-19922564,19922681-199227... 52 2e-07
06_01_0081 + 646100-646346,646432-646848,647067-647170,648152-64... 30 1.1
06_03_1275 + 28903961-28904123,28904225-28904322,28904406-289045... 29 2.6
04_04_0677 + 27195264-27195291,27196034-27196271,27196350-271965... 28 3.4
05_01_0421 + 3308692-3309070,3309199-3309339,3309776-3309897,331... 28 4.5
02_04_0202 - 20876793-20877142,20877380-20879512,20884063-20884732 28 4.5
04_03_0118 - 11474060-11475298 27 7.8
>07_01_0971 +
8169197-8169311,8170351-8170458,8170533-8170725,
8170811-8171069,8171151-8171207,8171433-8171480,
8171571-8171657,8171743-8171800,8171891-8171958,
8172066-8172161,8172244-8172291,8172658-8172696,
8172782-8172868,8173136-8173147
Length = 424
Score = 75.4 bits (177), Expect = 2e-14
Identities = 39/74 (52%), Positives = 52/74 (70%), Gaps = 2/74 (2%)
Frame = +2
Query: 110 DVFFEEKFPDDSWESNWVYSEHPGKE--FGKFKLTAGKFFSDPEDDKGLKTSEDARFYAL 283
+VFF+EKF +D WES WV SE E G++ T+GK+ DPED KG++TSED RFYA+
Sbjct: 30 EVFFQEKF-EDGWESRWVKSEWKKDENMAGEWNHTSGKWNGDPED-KGIQTSEDYRFYAI 87
Query: 284 SRKFKPFSNEGKPL 325
S ++ FSN+ K L
Sbjct: 88 SAEYPEFSNKDKTL 101
Score = 72.1 bits (169), Expect = 2e-13
Identities = 30/50 (60%), Positives = 37/50 (74%)
Frame = +3
Query: 327 VVQFTVKHEQDIDCGGGYLKVFDCKLXXKDMHGETPYXIMFGPDICGPGT 476
V+QF+VKHEQ +DCGGGY+K+ + K G+TPY IMFGPDICG T
Sbjct: 102 VLQFSVKHEQKLDCGGGYVKLLGGDVDQKKFGGDTPYSIMFGPDICGYST 151
>03_06_0563 -
34738732-34738890,34738965-34739009,34739154-34739201,
34739291-34739386,34739467-34739534,34739633-34739690,
34739783-34739869,34740004-34740051,34740360-34740416,
34740525-34740783,34740877-34741102,34741168-34741275,
34741885-34741987
Length = 453
Score = 73.3 bits (172), Expect = 9e-14
Identities = 31/50 (62%), Positives = 37/50 (74%)
Frame = +3
Query: 327 VVQFTVKHEQDIDCGGGYLKVFDCKLXXKDMHGETPYXIMFGPDICGPGT 476
V+QF+VKHEQ +DCGGGY+K+ + K GETPY IMFGPDICG T
Sbjct: 109 VLQFSVKHEQKLDCGGGYVKLLGGDVDQKKFGGETPYSIMFGPDICGYAT 158
Score = 62.1 bits (144), Expect = 2e-10
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 12/84 (14%)
Frame = +2
Query: 110 DVFFEEKFPDDSWESNWVYSE--HPGKEFGKFKLTAGKFFSDPEDD----------KGLK 253
+VFF+EKF DD WE WV SE G++ T+GK++ D +D G++
Sbjct: 26 EVFFQEKF-DDGWEDRWVKSEWKKDDNRAGEWNHTSGKWYGDADDKGMCEVTLLLCAGIQ 84
Query: 254 TSEDARFYALSRKFKPFSNEGKPL 325
TSED RFYA+S K+ FS++ K L
Sbjct: 85 TSEDYRFYAISAKYPEFSSKDKTL 108
>01_06_1654 -
38924090-38924101,38924183-38924215,38924737-38924829,
38924909-38924965,38925048-38925143,38925237-38925304,
38925429-38925486,38925572-38925658,38925935-38925982,
38926060-38926116,38926200-38926458,38926666-38926858,
38926991-38927098,38927849-38927957
Length = 425
Score = 72.5 bits (170), Expect = 2e-13
Identities = 37/74 (50%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Frame = +2
Query: 110 DVFFEEKFPDDSWESNWVYSEHPGKE--FGKFKLTAGKFFSDPEDDKGLKTSEDARFYAL 283
+V FEE+F +D WES WV S+ E G FK TAG++ DP DDKG++T+ DAR +A+
Sbjct: 28 EVIFEERF-EDGWESRWVKSDWKRSEGKAGTFKHTAGRYSGDP-DDKGIQTTLDARHFAI 85
Query: 284 SRKFKPFSNEGKPL 325
S K FSN+G+ L
Sbjct: 86 SAKIPEFSNKGRTL 99
Score = 68.9 bits (161), Expect = 2e-12
Identities = 27/50 (54%), Positives = 37/50 (74%)
Frame = +3
Query: 327 VVQFTVKHEQDIDCGGGYLKVFDCKLXXKDMHGETPYXIMFGPDICGPGT 476
V+Q+++K EQDI+CGGGY+K+ + K G+TPY +MFGPDICG T
Sbjct: 100 VLQYSIKFEQDIECGGGYIKLMSGYVNQKKFSGDTPYSLMFGPDICGTQT 149
>05_06_0014 +
24854462-24854570,24854958-24855065,24855240-24855432,
24855892-24856150,24856236-24856292,24856370-24856417,
24856725-24856811,24856885-24856942,24857084-24857151,
24857279-24857374,24857483-24857539,24857906-24857952,
24858184-24858210,24858312-24858504
Length = 468
Score = 69.7 bits (163), Expect = 1e-12
Identities = 35/77 (45%), Positives = 50/77 (64%), Gaps = 2/77 (2%)
Frame = +2
Query: 101 INCDVFFEEKFPDDSWESNWVYSEHPGKE--FGKFKLTAGKFFSDPEDDKGLKTSEDARF 274
++ +V FEE+F DD W S WV S+ E G FK TAG + DP DD+G++T+ DA+
Sbjct: 25 VSGEVIFEERF-DDDWGSRWVKSDWKKSEGKAGTFKHTAGSYSGDP-DDRGIQTTSDAKH 82
Query: 275 YALSRKFKPFSNEGKPL 325
+A+S KF FSN+ + L
Sbjct: 83 FAISAKFPEFSNKNRTL 99
Score = 65.7 bits (153), Expect = 2e-11
Identities = 27/50 (54%), Positives = 35/50 (70%)
Frame = +3
Query: 327 VVQFTVKHEQDIDCGGGYLKVFDCKLXXKDMHGETPYXIMFGPDICGPGT 476
VVQ+++K EQDI+CGG Y+K+ + K G+TPY MFGPDICG T
Sbjct: 100 VVQYSIKIEQDIECGGAYIKLMSGYVNQKKFGGDTPYSFMFGPDICGDQT 149
>04_03_0812 -
19922208-19922357,19922448-19922564,19922681-19922752,
19922864-19923993,19924939-19925008,19925125-19925199
Length = 537
Score = 52.4 bits (120), Expect = 2e-07
Identities = 24/50 (48%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Frame = +3
Query: 327 VVQFTVKHEQDIDCGGGYLKVF---DCKLXXKDMHGETPYXIMFGPDICG 467
V+QF V+ + ++CGG YLK D K+ ETPY IMFGPD CG
Sbjct: 91 VLQFEVRLQNGLECGGAYLKYIRPQDAAWDAKEFDNETPYTIMFGPDKCG 140
>06_01_0081 +
646100-646346,646432-646848,647067-647170,648152-648352,
649088-649798,649944-650674,650942-651017,651096-651182,
651429-651517,651917-651973,652402-652510,652590-652649,
652835-652919,653178-653242,653694-653753,653869-653913,
654697-654800,654877-655099
Length = 1156
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/54 (24%), Positives = 29/54 (53%)
Frame = +3
Query: 276 MLSPVSSNRSVMRVNPWVVQFTVKHEQDIDCGGGYLKVFDCKLXXKDMHGETPY 437
+L S++R+ + V+PW++ F + + I ++ ++ KL +D+ PY
Sbjct: 702 LLDTCSNDRNSVDVSPWILNFCLVKKWSIGRCNRFMHGYEDKLQIEDVCSYVPY 755
>06_03_1275 +
28903961-28904123,28904225-28904322,28904406-28904550,
28904690-28904814,28904957-28905049,28905297-28905362,
28905459-28905524,28905790-28905870,28905947-28906123,
28906212-28906287,28906394-28906521,28906639-28906950
Length = 509
Score = 28.7 bits (61), Expect = 2.6
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -3
Query: 146 TNHQETSPQRIHHNLSKIMPA-S*QRPVQQLSFSIHSTTFFKQKT 15
TNH E P+ H LSKI+ A S RP+ +S+ +H+ KT
Sbjct: 41 TNHVERPPKERH--LSKIIAAASGARPLADVSYCVHALARRLSKT 83
>04_04_0677 +
27195264-27195291,27196034-27196271,27196350-27196500,
27196578-27196972,27197270-27197339,27197414-27197696,
27197972-27198297,27198409-27199368
Length = 816
Score = 28.3 bits (60), Expect = 3.4
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Frame = +3
Query: 303 SVMRVNPWVVQFTV-----KHEQDIDCGGGYLKVFDCKLXXKDMHGETPYXIMFGPDIC 464
SV+ +PW+ K+ + I G G +VF C GET Y + D+C
Sbjct: 350 SVVSFSPWITSVGASTTDRKYNKSIIIGNG--QVFSCGGLSPSTPGETMYPLALADDVC 406
>05_01_0421 +
3308692-3309070,3309199-3309339,3309776-3309897,
3310369-3310632,3310719-3310849,3311254-3311461,
3311564-3311632,3311722-3311799,3312448-3312621
Length = 521
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -2
Query: 144 ESSGNFSSKNTSQFIEDNASKLTTTSTTA 58
ES+G SSK + E++ + TTTSTTA
Sbjct: 59 ESAGVSSSKKKRRIEEESPAATTTTSTTA 87
>02_04_0202 - 20876793-20877142,20877380-20879512,20884063-20884732
Length = 1050
Score = 27.9 bits (59), Expect = 4.5
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = -2
Query: 330 LPKGLPSLLNGLNLRERA*NLASSEVFKPLSSSGSLKNFPAVNLNFPNSFP 178
+PK + SL+N LN+ N S E+ L + G L+NF A + N P
Sbjct: 370 IPKEISSLMN-LNILHIDQNNLSGELPLGLCAGGQLQNFTAQDNNLVGPLP 419
>04_03_0118 - 11474060-11475298
Length = 412
Score = 27.1 bits (57), Expect = 7.8
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -3
Query: 170 HCTPNCFPTNHQETSPQRIHH 108
HCTP+C+P H + + H
Sbjct: 313 HCTPSCYPDEHYIPTYLHLRH 333
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,659,750
Number of Sequences: 37544
Number of extensions: 273778
Number of successful extensions: 701
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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