Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_J04
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    34   0.001
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    24   1.1  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    22   4.5  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   5.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 33.9 bits (74), Expect = 0.001
 Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
 Frame = +2

Query: 272 LSSLPKLRILNVSLNKLYNLPR-GFGSFPVLEILDLTYNNLNEKVLPGNFFIMDSLRALY 448
           L  LP L+ILN++ NK+ ++ R  F     LE + L  N L++  + G F  + SL  L 
Sbjct: 498 LWDLPNLQILNLARNKVQHVERYAFERNMRLEAIRLDGNFLSD--INGVFTSIASLLLLN 555

Query: 449 LGDN-----DFEFLPPEIGNLKNLQI 511
           L +N     D+ F+P   GNLK L I
Sbjct: 556 LSENHIEWFDYAFIP---GNLKWLDI 578



 Score = 29.9 bits (64), Expect = 0.022
 Identities = 37/134 (27%), Positives = 57/134 (42%), Gaps = 26/134 (19%)
 Frame = +2

Query: 281 LPKLRILNVSLNKLYNLP-RGFGSFPVLEILDLTYNNLNEKVLPGNFFIMDSLRALYLGD 457
           L +L +LN+S N L ++  R F     L+ILDL  N++ +++    F  + +L  L L D
Sbjct: 334 LIRLIVLNLSYNMLTHIDARMFKDLFFLQILDLRNNSI-DRIESNAFLPLYNLHTLELSD 392

Query: 458 NDFEFL-------------------------PPEIGNLKNLQILSMRENDLIEVPRELGQ 562
           N    +                         P    N  +L+ L +  N+L  VP  L  
Sbjct: 393 NKLRTVGAQLFNGLFVLNRLTLSGNAIASIDPLAFRNCSDLKELDLSGNELTSVPDALRD 452

Query: 563 LARLRELHLQGNRL 604
           LA L+ L L  NR+
Sbjct: 453 LALLKTLDLGENRI 466



 Score = 27.1 bits (57), Expect = 0.16
 Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
 Frame = +2

Query: 395  EKVLPGNFFIMDSLRALYLGDNDFEFLPP-EIGNLKNLQILSMRENDLIEVPRELG--QL 565
            E +    F  +++L+ L+L DN    L   E   L +L+ L + +N+LI     L    L
Sbjct: 831  ESIQNRTFNGLNNLQILHLEDNRIRELKGFEFERLSHLRELYL-QNNLIGFIGNLTFLPL 889

Query: 566  ARLRELHLQGNRLVVLP 616
              L  L L GNRLV  P
Sbjct: 890  RSLEILRLSGNRLVTFP 906


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = -3

Query: 216 LKLASAAGTTE--ILLWLRDRRVMFSRENK 133
           +++A A   TE  I +W ++RR+ + +ENK
Sbjct: 301 IEIAHALCLTERQIKIWFQNRRMKWKKENK 330


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = -3

Query: 216 LKLASAAGTTE--ILLWLRDRRVMFSREN 136
           +++A A   TE  I +W ++RR+ + +EN
Sbjct: 39  IEIAHALCLTERQIKIWFQNRRMKWKKEN 67


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 503 DSSNFQFQVVEIQNHCHPN 447
           D+S+   Q++E  +HCH N
Sbjct: 10  DASHCIQQILESVHHCHHN 28


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,463
Number of Sequences: 438
Number of extensions: 3704
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)