Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_I22
(650 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88308-7|AAB42322.1| 207|Caenorhabditis elegans Ribosomal prote... 114 4e-26
U88308-8|AAO61436.1| 88|Caenorhabditis elegans Ribosomal prote... 94 7e-20
U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical pr... 30 1.2
U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical pr... 30 1.2
U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z82083-9|CAB04975.1| 635|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z82083-6|CAB04974.1| 388|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z81503-6|CAB04115.1| 635|Caenorhabditis elegans Hypothetical pr... 29 3.8
U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protei... 28 5.0
U55373-4|ABR92605.1| 210|Caenorhabditis elegans Collagen protei... 28 5.0
U41535-2|AAB63402.1| 731|Caenorhabditis elegans Hypothetical pr... 27 8.7
U41535-1|AAK67247.1| 734|Caenorhabditis elegans Hypothetical pr... 27 8.7
>U88308-7|AAB42322.1| 207|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 13, isoform a protein.
Length = 207
Score = 114 bits (275), Expect = 4e-26
Identities = 52/102 (50%), Positives = 68/102 (66%)
Frame = +1
Query: 79 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 258
+GN M+ N HF K W + +KTWF+QPAR+ RR+QNR LR +VRCP
Sbjct: 4 RGNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQ 63
Query: 259 VRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPR*TQQ 384
RY+TK R GRGF+L+E++AAG++ ARTIGIAVD R T +
Sbjct: 64 KRYNTKTRLGRGFSLQELKAAGISQAQARTIGIAVDVRRTNK 105
Score = 66.9 bits (156), Expect = 1e-11
Identities = 34/90 (37%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Frame = +2
Query: 380 NKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPK 556
NK+ E L+ N R+KEY+A+LILFP K KG+++ EE K+A QLRG ++P+
Sbjct: 104 NKTAEGLKANADRLKEYKAKLILFPKKASAPKKGDSSAEELKVAAQLRGDVLPLSHTITF 163
Query: 557 SVARPITEDEKNFKAYQYLXGARSIAKLVG 646
R +T+ E+ + ++ L R+ K G
Sbjct: 164 DEPRQVTDAERKVEIFRLLRKERADKKYRG 193
>U88308-8|AAO61436.1| 88|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 13, isoform b protein.
Length = 88
Score = 94.3 bits (224), Expect = 7e-20
Identities = 41/84 (48%), Positives = 54/84 (64%)
Frame = +1
Query: 79 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 258
+GN M+ N HF K W + +KTWF+QPAR+ RR+QNR LR +VRCP
Sbjct: 4 RGNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQ 63
Query: 259 VRYHTKVRAGRGFTLREIRAAGLN 330
RY+TK R GRGF+L+E++AA N
Sbjct: 64 KRYNTKTRLGRGFSLQELKAAEEN 87
>U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical protein
F13B9.1c protein.
Length = 1609
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +2
Query: 443 ILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFK 598
++F K VLK + + A +GPL+P Q AP +V IT+ +N K
Sbjct: 879 VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 929
>U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical protein
F13B9.1b protein.
Length = 1614
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +2
Query: 443 ILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFK 598
++F K VLK + + A +GPL+P Q AP +V IT+ +N K
Sbjct: 879 VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 929
>U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical protein
F13B9.1a protein.
Length = 1632
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +2
Query: 443 ILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKNFK 598
++F K VLK + + A +GPL+P Q AP +V IT+ +N K
Sbjct: 901 VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 951
>Z82083-9|CAB04975.1| 635|Caenorhabditis elegans Hypothetical
protein ZK1010.9 protein.
Length = 635
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 604 ISFEVLFIFSDRSCN*FRSRLLNWH*WTT*LCSQLTFFFIGLTL 473
IS E++ I + SC R L H W T + TFF +GL +
Sbjct: 398 ISTEIVIIETVCSCLADRFHYLRQHRWITVVTVSTTFFLLGLVM 441
>Z82083-6|CAB04974.1| 388|Caenorhabditis elegans Hypothetical
protein ZK1010.8 protein.
Length = 388
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
Frame = -1
Query: 215 RGAT-ALAFF-ILFCFLRYRRAGWLNQVLTNL 126
RGAT A+A + I++CF+++ GW QV+ N+
Sbjct: 9 RGATIAIAVWNIIYCFIQFGILGWQFQVVKNI 40
>Z81503-6|CAB04115.1| 635|Caenorhabditis elegans Hypothetical
protein ZK1010.9 protein.
Length = 635
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 604 ISFEVLFIFSDRSCN*FRSRLLNWH*WTT*LCSQLTFFFIGLTL 473
IS E++ I + SC R L H W T + TFF +GL +
Sbjct: 398 ISTEIVIIETVCSCLADRFHYLRQHRWITVVTVSTTFFLLGLVM 441
>U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protein
140, isoform a protein.
Length = 289
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 4 LVCCTSMSSFTLFSLPW*NSDVKMGKGNNMIPNGHFHKD-WQRFVKTWFN 150
L CC ++ FT+ SL SD+KM + M+ H+D W R V+ N
Sbjct: 13 LTCCL-VTVFTMGSLLQEISDMKMEVEDGMMEFREIHQDTWNRVVRKHIN 61
>U55373-4|ABR92605.1| 210|Caenorhabditis elegans Collagen protein
140, isoform b protein.
Length = 210
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 4 LVCCTSMSSFTLFSLPW*NSDVKMGKGNNMIPNGHFHKD-WQRFVKTWFN 150
L CC ++ FT+ SL SD+KM + M+ H+D W R V+ N
Sbjct: 13 LTCCL-VTVFTMGSLLQEISDMKMEVEDGMMEFREIHQDTWNRVVRKHIN 61
>U41535-2|AAB63402.1| 731|Caenorhabditis elegans Hypothetical
protein F18A1.6a protein.
Length = 731
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 458 GKKVLKGEANEEERKLATQLRGPLMPVQQPAP 553
GK + NEE+R+LA LR + PAP
Sbjct: 206 GKLLASKYPNEEDRELAEYLRDKIASTSTPAP 237
>U41535-1|AAK67247.1| 734|Caenorhabditis elegans Hypothetical
protein F18A1.6b protein.
Length = 734
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 458 GKKVLKGEANEEERKLATQLRGPLMPVQQPAP 553
GK + NEE+R+LA LR + PAP
Sbjct: 209 GKLLASKYPNEEDRELAEYLRDKIASTSTPAP 240
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,130,327
Number of Sequences: 27780
Number of extensions: 285787
Number of successful extensions: 693
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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