Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_I19
(372 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos... 103 1e-23
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S... 99 2e-22
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo... 26 2.2
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha... 26 2.2
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr... 25 2.9
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi... 25 3.8
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ... 24 6.7
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos... 24 6.7
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 24 8.8
>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 1|||Manual
Length = 187
Score = 103 bits (246), Expect = 1e-23
Identities = 53/114 (46%), Positives = 76/114 (66%), Gaps = 2/114 (1%)
Frame = +2
Query: 26 MGIDINS*TRQESSAHRS*ISRYLLEVTCKAYRYLARRTNAKFNQIVLRRLFMSRINRPP 205
MGIDI ++S + L++ K YR+LARRT+++FN+ +L+RLF S+ NRPP
Sbjct: 1 MGIDIERHHVRKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPP 60
Query: 206 ISVSRLA--RHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARAR 361
IS+S++A K + EG V+VGTVT+D RL +PK++VAAL T+ ARAR
Sbjct: 61 ISISKIAALTSRKSASLEGKTTVIVGTVTDDERLLTVPKLSVAALRFTKSARAR 114
>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 99.1 bits (236), Expect = 2e-22
Identities = 50/114 (43%), Positives = 75/114 (65%), Gaps = 2/114 (1%)
Frame = +2
Query: 26 MGIDINS*TRQESSAHRS*ISRYLLEVTCKAYRYLARRTNAKFNQIVLRRLFMSRINRPP 205
MGIDI ++S + L++ K YR+LARRT+++FN+ +L+RLF S+ NRPP
Sbjct: 1 MGIDIERHHVKKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPP 60
Query: 206 ISVSRLA--RHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARAR 361
IS+S++A K + + VVVGTVT+D R+ +PK+++AAL T+ ARAR
Sbjct: 61 ISISKIAALTSRKSASSQNKTTVVVGTVTDDERMLTVPKLSIAALRFTKSARAR 114
>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
Length = 686
Score = 25.8 bits (54), Expect = 2.2
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -3
Query: 370 AKXACTSFFGNMKSSHRHLRYLVQSHVICDCP-HYH 266
AK T+ FGN K + YL + VIC P +YH
Sbjct: 473 AKPVKTATFGNGKKATSEEVYLRKDVVICKTPENYH 508
>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 25.8 bits (54), Expect = 2.2
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 42 THKHDRKVRRTEVKSQDIYL--RLLVKLTDTWPDVQMPNSIRSFYAGS 179
++ HDRK+ ++K +I L + VKL D ++ NS+ + G+
Sbjct: 195 SYLHDRKIIHRDIKPSNILLTSKGQVKLCDFGVSGELVNSLAGTFTGT 242
>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 905
Score = 25.4 bits (53), Expect = 2.9
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 65 SAHRS*ISRYLLEVTCKAYRYLARRTNAKFNQIV 166
+ HR+ ++ EV + Y YLA T AK++QI+
Sbjct: 309 ATHRAEVADAASEVHSE-YNYLAADTGAKYDQII 341
>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 25.0 bits (52), Expect = 3.8
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +2
Query: 257 LIAVVVGTVTNDVRLYKI 310
L+ +VV +TNDVRL++I
Sbjct: 694 LLKMVVPLITNDVRLWRI 711
>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 24.2 bits (50), Expect = 6.7
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = -3
Query: 355 TSFFGNMKSSHRHLRYLVQSHVICDCPHYHGNQTLTSWLLHVARQTRHRDWWPVDTAHK 179
T F+GN S HL Y H+I H +T+ S+ H+ ++ D ++ K
Sbjct: 287 THFYGNALSIIEHLIYQKDFHLISPL-HLTTLRTVPSFQRHIEQRLEIGDLESINYVEK 344
>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 24.2 bits (50), Expect = 6.7
Identities = 9/32 (28%), Positives = 13/32 (40%)
Frame = -3
Query: 277 PHYHGNQTLTSWLLHVARQTRHRDWWPVDTAH 182
P YH + L+H+ R +W P H
Sbjct: 220 PTYHFANVVDDHLMHITHVIRGEEWVPSTIKH 251
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 23.8 bits (49), Expect = 8.8
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = -1
Query: 153 NLAFVRLAKYL*ALQVTSSKYLEI*LRCAELSCRVYELMSIPI 25
NL + ++L + + TSSK+L I LR L R+ EL S I
Sbjct: 625 NLTLFHIPQFLLSNESTSSKFLNILLRF--LLSRIEELGSSDI 665
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,623,671
Number of Sequences: 5004
Number of extensions: 31823
Number of successful extensions: 102
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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