Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_I19
(372 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892... 104 3e-23
07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844... 102 1e-22
05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317... 101 2e-22
04_03_0263 - 13605195-13607366,13607535-13607702 31 0.38
01_06_0579 + 30379243-30379617 29 0.88
06_01_1101 - 9044679-9045320,9045484-9045890,9046020-9046274,904... 29 1.2
11_01_0024 + 163588-163897,164303-164406 27 4.7
09_04_0365 - 16962608-16963174,16963301-16963486,16963824-169638... 27 4.7
07_03_0435 + 18182657-18183509,18184477-18184574,18184663-181848... 27 4.7
02_05_0718 + 31203358-31203717,31203826-31204011 27 4.7
02_05_0895 - 32593155-32593190,32594228-32594279,32594544-325945... 27 6.2
02_01_0531 - 3856343-3856373,3856426-3856506,3857972-3858097,385... 27 6.2
>03_02_0954 -
12687373-12687582,12688885-12689067,12689160-12689288,
12689375-12689464,12689548-12689550
Length = 204
Score = 104 bits (249), Expect = 3e-23
Identities = 56/113 (49%), Positives = 78/113 (69%), Gaps = 1/113 (0%)
Frame = +2
Query: 26 MGIDINS*TRQESSAHRS*ISRYL-LEVTCKAYRYLARRTNAKFNQIVLRRLFMSRINRP 202
MGID+ + R + + + S + L++ K YR+L RRT + FN ++LRRLFMS+ NRP
Sbjct: 1 MGIDLVAGGRNKKTKRTAPKSDDVYLKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTNRP 60
Query: 203 PISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARAR 361
P+S+ RL R M+ +E IAV+VGTVT+D R+Y++P M VAAL TE ARAR
Sbjct: 61 PLSLRRLVRFME--GKENQIAVIVGTVTDDKRVYEVPAMKVAALRFTETARAR 111
>07_03_1667 +
28484069-28484071,28484151-28484240,28484339-28484491,
28484575-28484757,28486137-28486295
Length = 195
Score = 102 bits (244), Expect = 1e-22
Identities = 57/119 (47%), Positives = 79/119 (66%), Gaps = 7/119 (5%)
Frame = +2
Query: 26 MGIDINS*TRQESSAHRS*ISRYL-LEVTCKAYRYLARRTNAKFNQIVLRRLFMSRINRP 202
MGID+ + R + + + S + L++ K YR+L RRT + FN ++L+RLFMS+ NRP
Sbjct: 1 MGIDLVAGGRNKKTKRTAPRSEDVYLKLIVKLYRFLVRRTKSHFNAVILKRLFMSKTNRP 60
Query: 203 PISVSRLARHM--KKPTREGL----IAVVVGTVTNDVRLYKIPKMTVAALHVTEKARAR 361
P+S+ RL R M K P R + IAV+VGTVT+D R+Y++P M VAAL TE ARAR
Sbjct: 61 PLSMRRLVRFMEGKVPDRHAISGDQIAVIVGTVTDDKRIYEVPAMKVAALRFTETARAR 119
>05_01_0401 +
3169979-3169981,3170071-3170160,3170556-3170684,
3170814-3170999,3172001-3172159
Length = 188
Score = 101 bits (242), Expect = 2e-22
Identities = 55/113 (48%), Positives = 77/113 (68%), Gaps = 1/113 (0%)
Frame = +2
Query: 26 MGIDINS*TRQESSAHRS*ISRYL-LEVTCKAYRYLARRTNAKFNQIVLRRLFMSRINRP 202
MGID+ + R + + + S + L++ K YR+L RRT + FN ++L+RLFMS+ NRP
Sbjct: 1 MGIDLVAGGRNKKTKRTAPRSDDVYLKLLVKLYRFLVRRTKSNFNAVILKRLFMSKTNRP 60
Query: 203 PISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARAR 361
P+S+ RLA+ M + E IAV+VGTVT+D R+ +IPKM V AL TE ARAR
Sbjct: 61 PLSLRRLAKFM-EGKEENNIAVIVGTVTDDKRIQEIPKMKVTALRFTETARAR 112
>04_03_0263 - 13605195-13607366,13607535-13607702
Length = 779
Score = 30.7 bits (66), Expect = 0.38
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = -3
Query: 154 EFGICTSGQVSVSFTSNLK*IS*DLTSVRRTFLSC 50
E+GICTSGQ F SN L R+T L C
Sbjct: 269 EYGICTSGQCICPFQSNSSSRYFQLVDERKTNLGC 303
>01_06_0579 + 30379243-30379617
Length = 124
Score = 29.5 bits (63), Expect = 0.88
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = -2
Query: 305 CTVSRHL*LSPLPRQSNPHELASS 234
CT+S H SP+ R S+PH LASS
Sbjct: 11 CTISCH---SPMRRSSSPHRLASS 31
>06_01_1101 -
9044679-9045320,9045484-9045890,9046020-9046274,
9046375-9046498,9047237-9047289,9047388-9047648,
9047795-9047848,9047975-9048458,9048554-9048592
Length = 772
Score = 29.1 bits (62), Expect = 1.2
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -1
Query: 276 PTTTAIKPSRVGFFMWR-AKRDTEIGGRLIRLIKSR 172
P TTA KP RV F + + K D E+ G L L+++R
Sbjct: 676 PNTTAPKPKRVRFALPKDTKIDREVRGELQELMEAR 711
>11_01_0024 + 163588-163897,164303-164406
Length = 137
Score = 27.1 bits (57), Expect = 4.7
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 24 RWVLTSTHKHDRKVRRTEVKSQDIYLRLLVKLTDTW 131
RW + H H++ + R E ++ + LRLL T ++
Sbjct: 94 RWSRQTHHPHEKDLERIEKSNRVLLLRLLATSTSSF 129
>09_04_0365 -
16962608-16963174,16963301-16963486,16963824-16963896,
16964307-16964497,16964982-16965198,16965394-16965797,
16966593-16966658,16966668-16966721,16966945-16967079,
16967194-16967391,16967734-16967918,16968990-16969527
Length = 937
Score = 27.1 bits (57), Expect = 4.7
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 258 KPSRVGFFMWRAKRDTEIG 202
+PS+V FFMW A+R+ G
Sbjct: 899 EPSKVKFFMWLAEREVSHG 917
>07_03_0435 +
18182657-18183509,18184477-18184574,18184663-18184833,
18185524-18185624,18185702-18185837,18186007-18186057,
18186202-18186489,18186610-18186844,18186924-18187204,
18187336-18187557
Length = 811
Score = 27.1 bits (57), Expect = 4.7
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +1
Query: 166 STPALYEPYQPATNLCV-SFGAPHEEANS 249
S PA ++ Y+P+TNL + S+ P+ A+S
Sbjct: 701 SVPAYFQQYEPSTNLILPSYLLPYAAASS 729
>02_05_0718 + 31203358-31203717,31203826-31204011
Length = 181
Score = 27.1 bits (57), Expect = 4.7
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +1
Query: 253 GFDCRGSGDSHK*RETVQDTEDDGGCSSCYRK 348
G D GSGD K R D +DDG Y+K
Sbjct: 122 GDDDDGSGDERKPRYKKHDDDDDGERKPRYKK 153
>02_05_0895 -
32593155-32593190,32594228-32594279,32594544-32594584,
32594795-32594906,32595195-32595268,32595349-32595587,
32595710-32596678,32596725-32596878,32596957-32597244,
32597393-32597534,32598679-32598752,32598870-32598890
Length = 733
Score = 26.6 bits (56), Expect = 6.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 295 ETVQDTEDDGGCSSCYRKSS 354
E VQ +DD G S C R+SS
Sbjct: 253 ENVQSDDDDSGPSQCMRESS 272
>02_01_0531 -
3856343-3856373,3856426-3856506,3857972-3858097,
3858196-3858326,3858832-3858855,3859429-3859482,
3859967-3860136,3860322-3860380,3861274-3861390,
3861481-3861611,3861720-3861770,3862305-3862481
Length = 383
Score = 26.6 bits (56), Expect = 6.2
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +2
Query: 134 RRTNAKFNQIVLRRLFMSRINRPPISVSRLARHM--KKPTREGLIAV 268
RR N +F+ RR ++SR+ ++ ++RH+ K T E L A+
Sbjct: 213 RRGNVRFSHDSKRRPYLSRVEVKAVAEITISRHLSSKGVTPEALAAL 259
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,760,166
Number of Sequences: 37544
Number of extensions: 220553
Number of successful extensions: 579
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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