Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_I19
(372 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L11566-1|AAA16329.1| 188|Homo sapiens ribosomal protein L18 pro... 118 8e-27
BC009708-1|AAH09708.1| 188|Homo sapiens ribosomal protein L18 p... 118 8e-27
BC000374-1|AAH00374.1| 188|Homo sapiens ribosomal protein L18 p... 118 8e-27
AB061825-1|BAB79463.1| 188|Homo sapiens ribosomal protein L18 p... 118 8e-27
DQ403032-1|ABD77165.1| 164|Homo sapiens ribosomal protein L18 p... 117 1e-26
BC021743-1|AAH21743.1| 188|Homo sapiens ribosomal protein L18 p... 116 3e-26
Z49155-1|CAA89025.1| 180|Homo sapiens cL83D3.1 (exons 3-7) prot... 31 1.6
L12392-1|AAB38240.1| 3144|Homo sapiens Huntington's Disease prot... 31 1.6
AB016794-1|BAA36753.1| 3144|Homo sapiens huntingtin protein. 31 1.6
BC114491-1|AAI14492.1| 1189|Homo sapiens NEK1 protein protein. 29 4.8
BC015147-1|AAH15147.1| 403|Homo sapiens Unknown (protein for IM... 29 4.8
AB067488-1|BAB67794.1| 1265|Homo sapiens KIAA1901 protein protein. 29 4.8
>L11566-1|AAA16329.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 118 bits (283), Expect = 8e-27
Identities = 58/112 (51%), Positives = 77/112 (68%)
Frame = +2
Query: 26 MGIDINS*TRQESSAHRS*ISRYLLEVTCKAYRYLARRTNAKFNQIVLRRLFMSRINRPP 205
MG+DI ++ L + K YR+LARRTN+ FNQ+VL+RLFMSR NRPP
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60
Query: 206 ISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARAR 361
+S+SR+ R MK P RE AVVVGT+T+DVR+ ++PK+ V AL VT +AR+R
Sbjct: 61 LSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSR 112
>BC009708-1|AAH09708.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 118 bits (283), Expect = 8e-27
Identities = 58/112 (51%), Positives = 77/112 (68%)
Frame = +2
Query: 26 MGIDINS*TRQESSAHRS*ISRYLLEVTCKAYRYLARRTNAKFNQIVLRRLFMSRINRPP 205
MG+DI ++ L + K YR+LARRTN+ FNQ+VL+RLFMSR NRPP
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60
Query: 206 ISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARAR 361
+S+SR+ R MK P RE AVVVGT+T+DVR+ ++PK+ V AL VT +AR+R
Sbjct: 61 LSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSR 112
>BC000374-1|AAH00374.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 118 bits (283), Expect = 8e-27
Identities = 58/112 (51%), Positives = 77/112 (68%)
Frame = +2
Query: 26 MGIDINS*TRQESSAHRS*ISRYLLEVTCKAYRYLARRTNAKFNQIVLRRLFMSRINRPP 205
MG+DI ++ L + K YR+LARRTN+ FNQ+VL+RLFMSR NRPP
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60
Query: 206 ISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARAR 361
+S+SR+ R MK P RE AVVVGT+T+DVR+ ++PK+ V AL VT +AR+R
Sbjct: 61 LSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSR 112
>AB061825-1|BAB79463.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 118 bits (283), Expect = 8e-27
Identities = 58/112 (51%), Positives = 77/112 (68%)
Frame = +2
Query: 26 MGIDINS*TRQESSAHRS*ISRYLLEVTCKAYRYLARRTNAKFNQIVLRRLFMSRINRPP 205
MG+DI ++ L + K YR+LARRTN+ FNQ+VL+RLFMSR NRPP
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60
Query: 206 ISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARAR 361
+S+SR+ R MK P RE AVVVGT+T+DVR+ ++PK+ V AL VT +AR+R
Sbjct: 61 LSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSR 112
>DQ403032-1|ABD77165.1| 164|Homo sapiens ribosomal protein L18
protein.
Length = 164
Score = 117 bits (281), Expect = 1e-26
Identities = 54/88 (61%), Positives = 70/88 (79%)
Frame = +2
Query: 98 LEVTCKAYRYLARRTNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVG 277
L + K YR+LARRTN+ FNQ+VL+RLFMSR NRPP+S+SR+ R MK P RE AVVVG
Sbjct: 2 LRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVG 61
Query: 278 TVTNDVRLYKIPKMTVAALHVTEKARAR 361
T+T+DVR+ ++PK+ V AL VT +AR+R
Sbjct: 62 TITDDVRVQEVPKLKVCALRVTSRARSR 89
>BC021743-1|AAH21743.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 116 bits (278), Expect = 3e-26
Identities = 57/112 (50%), Positives = 76/112 (67%)
Frame = +2
Query: 26 MGIDINS*TRQESSAHRS*ISRYLLEVTCKAYRYLARRTNAKFNQIVLRRLFMSRINRPP 205
MG+DI ++ L + K YR+LARRTN+ FNQ+VL+RLFMSR NRPP
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60
Query: 206 ISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARAR 361
+ +SR+ R MK P RE AVVVGT+T+DVR+ ++PK+ V AL VT +AR+R
Sbjct: 61 LCLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSR 112
>Z49155-1|CAA89025.1| 180|Homo sapiens cL83D3.1 (exons 3-7)
protein.
Length = 180
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = -3
Query: 367 KXACTSFFGNMKSSHRHLRYLVQSHVICDCPHYHGNQTLTSWLLHV 230
K +F N+KSS +R + C H Q SWLL+V
Sbjct: 133 KVLLKAFIANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYSWLLNV 178
>L12392-1|AAB38240.1| 3144|Homo sapiens Huntington's Disease protein
protein.
Length = 3144
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = -3
Query: 367 KXACTSFFGNMKSSHRHLRYLVQSHVICDCPHYHGNQTLTSWLLHV 230
K +F N+KSS +R + C H Q SWLL+V
Sbjct: 251 KVLLKAFIANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYSWLLNV 296
>AB016794-1|BAA36753.1| 3144|Homo sapiens huntingtin protein.
Length = 3144
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = -3
Query: 367 KXACTSFFGNMKSSHRHLRYLVQSHVICDCPHYHGNQTLTSWLLHV 230
K +F N+KSS +R + C H Q SWLL+V
Sbjct: 251 KVLLKAFIANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYSWLLNV 296
>BC114491-1|AAI14492.1| 1189|Homo sapiens NEK1 protein protein.
Length = 1189
Score = 29.1 bits (62), Expect = 4.8
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 33 LTSTHKHDRKVRRTEVKSQDIYL 101
L H HDRK+ ++KSQ+I+L
Sbjct: 114 LALKHVHDRKILHRDIKSQNIFL 136
>BC015147-1|AAH15147.1| 403|Homo sapiens Unknown (protein for
IMAGE:4063881) protein.
Length = 403
Score = 29.1 bits (62), Expect = 4.8
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 33 LTSTHKHDRKVRRTEVKSQDIYL 101
L H HDRK+ ++KSQ+I+L
Sbjct: 114 LALKHVHDRKILHRDIKSQNIFL 136
>AB067488-1|BAB67794.1| 1265|Homo sapiens KIAA1901 protein protein.
Length = 1265
Score = 29.1 bits (62), Expect = 4.8
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 33 LTSTHKHDRKVRRTEVKSQDIYL 101
L H HDRK+ ++KSQ+I+L
Sbjct: 121 LALKHVHDRKILHRDIKSQNIFL 143
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,357,921
Number of Sequences: 237096
Number of extensions: 1213700
Number of successful extensions: 2610
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2605
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2421480012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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