Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_I19
(372 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL021492-6|CAA16387.1| 188|Caenorhabditis elegans Hypothetical ... 103 4e-23
U38377-2|AAN72421.1| 199|Caenorhabditis elegans Sox (mammalian ... 31 0.35
U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian ... 31 0.35
Z66524-9|CAA91422.3| 696|Caenorhabditis elegans Hypothetical pr... 27 3.2
Z66524-8|CAH10782.1| 753|Caenorhabditis elegans Hypothetical pr... 27 3.2
Z66523-11|CAA91417.3| 696|Caenorhabditis elegans Hypothetical p... 27 3.2
Z66523-10|CAH04723.1| 753|Caenorhabditis elegans Hypothetical p... 27 3.2
Z69793-8|CAA93674.2| 354|Caenorhabditis elegans Hypothetical pr... 27 5.7
AL008867-3|CAC14271.1| 354|Caenorhabditis elegans Hypothetical ... 27 5.7
AF016449-17|AAG24005.1| 306|Caenorhabditis elegans Hypothetical... 27 5.7
AL117202-27|CAB57897.1| 579|Caenorhabditis elegans Hypothetical... 26 7.5
AF031843-1|AAC13679.1| 579|Caenorhabditis elegans GLY9 protein. 26 7.5
>AL021492-6|CAA16387.1| 188|Caenorhabditis elegans Hypothetical
protein Y45F10D.12 protein.
Length = 188
Score = 103 bits (247), Expect = 4e-23
Identities = 56/112 (50%), Positives = 72/112 (64%)
Frame = +2
Query: 26 MGIDINS*TRQESSAHRS*ISRYLLEVTCKAYRYLARRTNAKFNQIVLRRLFMSRINRPP 205
MGIDIN + + L + K Y +LARRT KFN IVL+RL MSR NR P
Sbjct: 1 MGIDINHKHDRVARRTAPKSENPYLRLLSKLYAFLARRTGEKFNAIVLKRLRMSRRNRQP 60
Query: 206 ISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARAR 361
+S+++LAR ++K E V + TVT+D RLY +PK++VAALHVTE ARAR
Sbjct: 61 LSLAKLARAVQKAGNENKTVVTLSTVTDDARLYTVPKISVAALHVTEGARAR 112
>U38377-2|AAN72421.1| 199|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 2, isoform b protein.
Length = 199
Score = 30.7 bits (66), Expect = 0.35
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +1
Query: 151 IQSDRSTPALYEPYQPATNLCVSFGAPHEEANS*GFDCR-GSGDSHK*RETVQDTED 318
+ +D S+P+ ++P +TN S+ P E++ G D G+ DS + R T+D
Sbjct: 116 VPTDNSSPSQFQPSPMSTNFAGSYLTPKSESSPVGSDSTVGTVDSSQFRAYYDHTKD 172
>U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 2, isoform a protein.
Length = 283
Score = 30.7 bits (66), Expect = 0.35
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +1
Query: 151 IQSDRSTPALYEPYQPATNLCVSFGAPHEEANS*GFDCR-GSGDSHK*RETVQDTED 318
+ +D S+P+ ++P +TN S+ P E++ G D G+ DS + R T+D
Sbjct: 200 VPTDNSSPSQFQPSPMSTNFAGSYLTPKSESSPVGSDSTVGTVDSSQFRAYYDHTKD 256
>Z66524-9|CAA91422.3| 696|Caenorhabditis elegans Hypothetical
protein T13H5.1a protein.
Length = 696
Score = 27.5 bits (58), Expect = 3.2
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +3
Query: 21 QRWVLTSTHKHDRKVRRTEVKSQDIYLRLLVKLTDTWPDVQMPNSIRSFY 170
Q W LT + +V TEVK+ ++ KLT T P+ ++ F+
Sbjct: 170 QYWPLTKFQFREIEVETTEVKTYSHFVIRTFKLTRTTPESIETRIVKHFH 219
>Z66524-8|CAH10782.1| 753|Caenorhabditis elegans Hypothetical
protein T13H5.1b protein.
Length = 753
Score = 27.5 bits (58), Expect = 3.2
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +3
Query: 21 QRWVLTSTHKHDRKVRRTEVKSQDIYLRLLVKLTDTWPDVQMPNSIRSFY 170
Q W LT + +V TEVK+ ++ KLT T P+ ++ F+
Sbjct: 227 QYWPLTKFQFREIEVETTEVKTYSHFVIRTFKLTRTTPESIETRIVKHFH 276
>Z66523-11|CAA91417.3| 696|Caenorhabditis elegans Hypothetical
protein T13H5.1a protein.
Length = 696
Score = 27.5 bits (58), Expect = 3.2
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +3
Query: 21 QRWVLTSTHKHDRKVRRTEVKSQDIYLRLLVKLTDTWPDVQMPNSIRSFY 170
Q W LT + +V TEVK+ ++ KLT T P+ ++ F+
Sbjct: 170 QYWPLTKFQFREIEVETTEVKTYSHFVIRTFKLTRTTPESIETRIVKHFH 219
>Z66523-10|CAH04723.1| 753|Caenorhabditis elegans Hypothetical
protein T13H5.1b protein.
Length = 753
Score = 27.5 bits (58), Expect = 3.2
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +3
Query: 21 QRWVLTSTHKHDRKVRRTEVKSQDIYLRLLVKLTDTWPDVQMPNSIRSFY 170
Q W LT + +V TEVK+ ++ KLT T P+ ++ F+
Sbjct: 227 QYWPLTKFQFREIEVETTEVKTYSHFVIRTFKLTRTTPESIETRIVKHFH 276
>Z69793-8|CAA93674.2| 354|Caenorhabditis elegans Hypothetical
protein R03A10.6 protein.
Length = 354
Score = 26.6 bits (56), Expect = 5.7
Identities = 22/90 (24%), Positives = 42/90 (46%)
Frame = +2
Query: 71 HRS*ISRYLLEVTCKAYRYLARRTNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTR 250
H + +S+Y T R + TN+ N+ + RLF R + + R A +K+ TR
Sbjct: 250 HANLLSKYST-TTRSTRRKFSELTNSSENENKITRLFKQRDSVSVGNEPRRAHGLKQNTR 308
Query: 251 EGLIAVVVGTVTNDVRLYKIPKMTVAALHV 340
++ +++ +T +IP + +HV
Sbjct: 309 MLVVVILLFLIT------EIPAALIFTIHV 332
>AL008867-3|CAC14271.1| 354|Caenorhabditis elegans Hypothetical
protein R03A10.6 protein.
Length = 354
Score = 26.6 bits (56), Expect = 5.7
Identities = 22/90 (24%), Positives = 42/90 (46%)
Frame = +2
Query: 71 HRS*ISRYLLEVTCKAYRYLARRTNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTR 250
H + +S+Y T R + TN+ N+ + RLF R + + R A +K+ TR
Sbjct: 250 HANLLSKYST-TTRSTRRKFSELTNSSENENKITRLFKQRDSVSVGNEPRRAHGLKQNTR 308
Query: 251 EGLIAVVVGTVTNDVRLYKIPKMTVAALHV 340
++ +++ +T +IP + +HV
Sbjct: 309 MLVVVILLFLIT------EIPAALIFTIHV 332
>AF016449-17|AAG24005.1| 306|Caenorhabditis elegans Hypothetical
protein C50H11.17 protein.
Length = 306
Score = 26.6 bits (56), Expect = 5.7
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 190 YQPATNLCVSFGAPHEEANS*GFDCRGSGDSH 285
Y+ A NLC++ P E+ANS F C G H
Sbjct: 229 YEDAFNLCLNEVKPREDANS--FPCFIDGRFH 258
>AL117202-27|CAB57897.1| 579|Caenorhabditis elegans Hypothetical
protein Y47D3A.23a protein.
Length = 579
Score = 26.2 bits (55), Expect = 7.5
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Frame = +3
Query: 33 LTSTHKHDRKVRRTEVKSQDI--YLRLLVKLTDTWPDV--QMPN 152
+ + H++DR RRT+ + DI Y LV+L +TW Q+PN
Sbjct: 26 IVAYHRNDR--RRTKFQFPDIEKYAEELVRLPETWNGELHQIPN 67
>AF031843-1|AAC13679.1| 579|Caenorhabditis elegans GLY9 protein.
Length = 579
Score = 26.2 bits (55), Expect = 7.5
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Frame = +3
Query: 33 LTSTHKHDRKVRRTEVKSQDI--YLRLLVKLTDTWPDV--QMPN 152
+ + H++DR RRT+ + DI Y LV+L +TW Q+PN
Sbjct: 26 IVAYHRNDR--RRTKFQFPDIEKYAEELVRLPETWNGELHQIPN 67
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,096,299
Number of Sequences: 27780
Number of extensions: 185122
Number of successful extensions: 488
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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