Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_I19
         (372 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     25   0.22 
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          24   0.50 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   1.2  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   1.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   1.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    20   8.2  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    20   8.2  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    20   8.2  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 25.4 bits (53), Expect = 0.22
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 133 QTYKCQIQSDRSTPALYEPYQPA 201
           QT + Q+  DR++P  Y  Y PA
Sbjct: 410 QTLRPQVSPDRTSPMEYRLYNPA 432


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 24.2 bits (50), Expect = 0.50
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 315 FGILYSLTSFVTVPTTTA 262
           FG +Y L ++  VPTTTA
Sbjct: 367 FGSIYFLGNYSLVPTTTA 384


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -1

Query: 330 AATVIFGILYSLTSFVTVPTTTAIKPS 250
           ++ VIFG+L+ L SF+   T T ++P+
Sbjct: 14  SSCVIFGVLFVLFSFLR--TRTKLQPT 38


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -1

Query: 330 AATVIFGILYSLTSFVTVPTTTAIKPS 250
           ++ VIFG+L+ L SF+   T T ++P+
Sbjct: 14  SSCVIFGVLFVLFSFLR--TRTKLQPT 38


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -1

Query: 225 AKRDTEIGGRLIRLIKSRRRTI 160
           AK+ T IGG+ + ++KS  +++
Sbjct: 889 AKKATNIGGKPVAVVKSSAQSL 910


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +2

Query: 95  LLEVTCKAYRYLARRTNAKFNQ 160
           +L V C  Y  L R+    FN+
Sbjct: 825 MLIVVCTVYAVLTRKIPEAFNE 846


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -1

Query: 294 TSFVTVPT-TTAIKPSRVGFFMWRAKRD 214
           T F  V + + + K +R+GF   R KRD
Sbjct: 240 TDFQDVESGSESFKRARMGFHGMRGKRD 267


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -1

Query: 294 TSFVTVPT-TTAIKPSRVGFFMWRAKRD 214
           T F  V + + + K +R+GF   R KRD
Sbjct: 240 TDFQDVESGSESFKRARMGFHGMRGKRD 267


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,750
Number of Sequences: 438
Number of extensions: 2106
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8928360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)