Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_I18
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   3.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   5.9  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   7.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
 Frame = +2

Query: 419 PTQGVP--YPATQGAPYPTTQGAPYPTTQGAPYPTTQGLP 532
           P+ G P   P+   +P    +G+P   +QG P     G P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -3

Query: 249 LINHCPSKILILQVFLSFSQNHFSVMMKLMRP 154
           +++ CPS ++ LQV ++ SQ   ++  K   P
Sbjct: 853 VLSGCPSNMMELQVDIADSQQPLNLSKKSPSP 884


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -2

Query: 556 WHTLSNWVW*TLSCRVWRTLSGGVW 482
           W     W++  L C +W  L+  VW
Sbjct: 125 WEVFKVWIFGDLWCSIW--LAVDVW 147


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 566 QPGMAHSEQLGMVDPE 519
           QPGM+  E LG+  P+
Sbjct: 467 QPGMSFGEPLGLRRPQ 482


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,178
Number of Sequences: 438
Number of extensions: 4005
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)