Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_I09
         (518 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar...   128   4e-31
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha...   128   6e-31
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    25   5.1  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    25   9.0  

>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 189

 Score =  128 bits (310), Expect = 4e-31
 Identities = 63/102 (61%), Positives = 75/102 (73%)
 Frame = +1

Query: 211 WFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLG 390
           W GS+K  A +RT  S + NMI GVT+GF+YKMR VYAHFPIN   TE  +++EIRNFLG
Sbjct: 58  WHGSRKHNACIRTAYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLG 117

Query: 391 EKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSXSAALI 516
           E+  R +K  PGVTV  S   KDE+IIEGNSLE+VS SAA I
Sbjct: 118 ERITRVIKCLPGVTVSISSAVKDEIIIEGNSLENVSQSAANI 159



 Score = 52.4 bits (120), Expect = 4e-08
 Identities = 20/45 (44%), Positives = 36/45 (80%)
 Frame = +3

Query: 42  KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIR 176
           + I  ++ + IP+G++V +K+RLVTVKGPRGVLK+N + + ++++
Sbjct: 3   RDIYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELK 47


>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score =  128 bits (308), Expect = 6e-31
 Identities = 62/102 (60%), Positives = 76/102 (74%)
 Frame = +1

Query: 211 WFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLG 390
           W GS+K  A +R+V S + NMI GVT+GF+YKMR VYAHFPIN   TE  +++EIRNFLG
Sbjct: 58  WHGSRKHNACIRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLG 117

Query: 391 EKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSXSAALI 516
           E+  R +K  PGVTV  S   KDE+I+EGNSLE+VS SAA I
Sbjct: 118 ERITRVIKCLPGVTVSISSAVKDEIILEGNSLENVSQSAANI 159



 Score = 48.8 bits (111), Expect = 5e-07
 Identities = 19/45 (42%), Positives = 33/45 (73%)
 Frame = +3

Query: 42  KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIR 176
           + I  ++ + IP G+TV +K+R VTV GPRG LK+N +H+ ++++
Sbjct: 3   RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMK 47


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 6/23 (26%), Positives = 15/23 (65%)
 Frame = -3

Query: 444 RVNDGHTRCHLYPSDVFLPQEVT 376
           ++N+ ++ CH YP  + +P  ++
Sbjct: 152 KINENYSECHSYPQALAVPASIS 174


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 95  MDRKPVWDFDFLICYNLLHVWALF 24
           M+R P+  FDF+   N +H   LF
Sbjct: 294 MERLPIPPFDFITSLNSIHEGLLF 317


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,125,287
Number of Sequences: 5004
Number of extensions: 43032
Number of successful extensions: 104
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)