Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_I08
(457 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931 31 0.44
12_02_0259 + 16527788-16527842,16528014-16528381 28 3.1
11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395 28 4.1
05_03_0604 - 16132173-16132391,16132488-16132556,16132824-161328... 28 4.1
04_04_1230 + 31929261-31929386,31929497-31929643,31929974-319300... 28 4.1
11_06_0204 + 21191611-21192807 27 5.4
02_03_0101 + 15233783-15234601 27 5.4
11_02_0015 - 7355989-7357092 27 7.2
01_05_0623 - 23768426-23768794 27 7.2
12_02_1224 + 27158810-27161366,27161593-27161969 27 9.5
06_03_1008 + 26873805-26873891,26874038-26874107,26874237-268743... 27 9.5
05_07_0250 + 28669593-28669660,28669759-28669817,28670144-286702... 27 9.5
01_05_0372 + 21541220-21541457,21541832-21541912,21542027-215420... 27 9.5
>04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931
Length = 246
Score = 31.1 bits (67), Expect = 0.44
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +2
Query: 326 LNGGEYRGFWVRWDSGIISAGREGEAIPFISWSDPEP 436
L G +R WV W +I AG G F+ PEP
Sbjct: 195 LVGWNWRHHWVYWLGPLIGAGMAGALYEFVMAEQPEP 231
>12_02_0259 + 16527788-16527842,16528014-16528381
Length = 140
Score = 28.3 bits (60), Expect = 3.1
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = -1
Query: 412 EWNSFTLASSGDNAAIPTNPKTTIFPSVKNSGAFNFNLIGLGSIFPDDALSVS 254
E +S +A+ G +A+P PK +F + + L+G G P++ SV+
Sbjct: 68 EVSSVVVAAPGFRSAVPVEPK--LFRRIAGGEEKGYYLVGDGEAIPNNGSSVT 118
>11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395
Length = 794
Score = 27.9 bits (59), Expect = 4.1
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Frame = -2
Query: 423 DQDMNGIASPSRPAEIMPLS-QR----TQKPRYSPPLRIP 319
D+ + SP+ PA P S QR Q PRY PPLR P
Sbjct: 324 DRAASPARSPASPARRGPQSPQRRVSPAQSPRYQPPLRKP 363
>05_03_0604 -
16132173-16132391,16132488-16132556,16132824-16132898,
16132981-16133113,16133188-16133297,16133360-16133407,
16133657-16133983,16135006-16135233,16135360-16135689,
16135780-16136586
Length = 781
Score = 27.9 bits (59), Expect = 4.1
Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 10/104 (9%)
Frame = +2
Query: 155 VQFKVRAANDAHVALTTGPQESDPMYEVMIGGWGNAKSVIRKNRTKPDKVEIESP----- 319
+ F+ A ND V L Q Y + + ++ +R K K+E++
Sbjct: 33 ITFEASAHND--VTLVFREQPGSQHYHYKMDNSRHYIVILGSHRNKRLKIEVDGKTVVDV 90
Query: 320 ---GILNGGEYRGFWVRWDSGIIS--AGREGEAIPFISWSDPEP 436
G+ ++ +W+ G+IS GR W DP+P
Sbjct: 91 AGIGLCCSSSFQSYWISIYDGLISIGQGRHPNNNILFQWLDPDP 134
>04_04_1230 +
31929261-31929386,31929497-31929643,31929974-31930065,
31930159-31930255,31930533-31930576,31930708-31930796,
31931083-31931174,31931266-31931412,31931539-31931644,
31931736-31931812,31932281-31932352,31932738-31932865,
31932947-31933142,31933206-31933407,31933642-31933691
Length = 554
Score = 27.9 bits (59), Expect = 4.1
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -1
Query: 319 GAFNFNLIGLGSIFPDDALSVSPASNHHLIHRIRFLRAC 203
G++NF+L L + D A + PAS+ L+ +R R C
Sbjct: 11 GSYNFHLRSLSAASRDSAAAADPASDPILLESVR--RVC 47
>11_06_0204 + 21191611-21192807
Length = 398
Score = 27.5 bits (58), Expect = 5.4
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 218 SDPMYEVMIGGWGNAKSVIRKNRTKPDKVEIESPGILNG 334
S +Y G WG+A ++ R++ D V++ PG+ G
Sbjct: 195 SAAIYSSETGAWGDAIALEREHPDPDDAVKVGKPGVQVG 233
>02_03_0101 + 15233783-15234601
Length = 272
Score = 27.5 bits (58), Expect = 5.4
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 318 PEFLTEGNIVVFGFVGIAALSPLDARVKLFHSYLGLIP 431
PE T+G V+ + + + P+ RV+LF Y+ + P
Sbjct: 222 PEHTTDGMPVILESMALVSTPPVAKRVRLFGVYIDVPP 259
>11_02_0015 - 7355989-7357092
Length = 367
Score = 27.1 bits (57), Expect = 7.2
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 297 IRLKLKAPEFLTEGNIVVFGFVGIAALSPLDARVKLFHS 413
+RL LKA ++ T+ G + ALS LD RV F S
Sbjct: 25 MRLSLKAVDWATDATRRADGTLNRLALSVLDPRVPAFSS 63
>01_05_0623 - 23768426-23768794
Length = 122
Score = 27.1 bits (57), Expect = 7.2
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 203 TGPQESDPMYEVMIGGWGNAKSVIRKNRTKP 295
T + S P + + GWGN S + + RT P
Sbjct: 38 TSTKRSSPAWGGELVGWGNMSSPVWERRTSP 68
>12_02_1224 + 27158810-27161366,27161593-27161969
Length = 977
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +2
Query: 356 VRWDSGIISAGREGEAI-PFISWS 424
V+W SG ++AG EGEA+ + WS
Sbjct: 894 VQWVSGKVAAGGEGEALDKRLEWS 917
>06_03_1008 +
26873805-26873891,26874038-26874107,26874237-26874334,
26874505-26874643,26874778-26874860,26875145-26875195,
26875305-26875370,26875465-26875530,26875637-26875717,
26876042-26876119,26876218-26876394,26876467-26876545,
26876752-26876870,26877029-26877430
Length = 531
Score = 26.6 bits (56), Expect = 9.5
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -1
Query: 400 FTLASSGDNAAIPTNPKTTIFPSVKNSGAFNFNLIGLGSIFPDDA 266
F L SG A+ T P T V N A F+ + L S++ D+A
Sbjct: 371 FALDKSGWELALVTAPSTHTSRPVDNQLAGGFDKLLLDSLYEDEA 415
>05_07_0250 +
28669593-28669660,28669759-28669817,28670144-28670248,
28670983-28671019,28671446-28671542,28671700-28671781,
28671870-28671939,28672049-28672212,28672897-28672940,
28673021-28673176,28673273-28673494,28673736-28673883,
28673947-28674034,28675032-28675159,28675259-28675323,
28675380-28675426,28675427-28675539,28676003-28676019
Length = 569
Score = 26.6 bits (56), Expect = 9.5
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 260 AKSVIRKNRTKPDKVEIESPGILNGGEYRGFWVRWDSGIIS 382
AKS RK R K D+V +++ I+ G W++ S +I+
Sbjct: 247 AKSSKRKKRRKDDEVMMDNDQIMIPGNVYQTWLKDPSSLIT 287
>01_05_0372 +
21541220-21541457,21541832-21541912,21542027-21542092,
21543050-21543178,21544619-21544674,21545451-21545732
Length = 283
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -1
Query: 433 FGIRPRYEWNSFTLASSGDNAAIPTNPKTTIF 338
F ++PRY + + S+GD AA+P P T++
Sbjct: 123 FIVKPRYAFGAQGRDSTGDQAAVP--PDATLY 152
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,651,859
Number of Sequences: 37544
Number of extensions: 241550
Number of successful extensions: 718
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -