Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_I08
         (457 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   0.90 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   0.90 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   0.90 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   2.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   3.6  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   6.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   6.3  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   6.3  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   8.4  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 0.90
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 315 LSISTLSGLVLFFLMTLLAFPQPPIITSYIG 223
           LSIS L  L +FFL+ +   P   ++   +G
Sbjct: 278 LSISILISLHVFFLLVVEIIPPTSLVVPLLG 308


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 0.90
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 315 LSISTLSGLVLFFLMTLLAFPQPPIITSYIG 223
           LSIS L  L +FFL+ +   P   ++   +G
Sbjct: 278 LSISILISLHVFFLLVVEIIPPTSLVVPLLG 308


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.8 bits (49), Expect = 0.90
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 315 LSISTLSGLVLFFLMTLLAFPQPPIITSYIG 223
           LSIS L  L +FFL+     P   ++   +G
Sbjct: 274 LSISILLSLTVFFLLLAEIIPPTSLVVPLLG 304


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 315 LSISTLSGLVLFFLMTLLAFPQPPIITSYIG 223
           LSIS L  L +FFL+     P   +    +G
Sbjct: 270 LSISILLSLTVFFLLLAEIIPPTSLTVPLLG 300


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -1

Query: 394  LASSGDNAAIPTNPKTTIFPSVK 326
            +ASS  N    T   TTI P VK
Sbjct: 949  VASSASNVTNVTTNLTTILPPVK 971


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 414 MNGIASPSRPAEIMPLSQRTQKPRY 340
           +NG+    RP  +   SQR Q  +Y
Sbjct: 318 LNGLEFAGRPQNLQLQSQRNQLIQY 342


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +2

Query: 227  MYEVMIGGWGNAKSVIRKNRTKPDK 301
            ++   +G W  +K  +R  R KP K
Sbjct: 1017 VFRESVGAWAYSKYGLRFLRAKPGK 1041


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 417 DMNGIASPSRPAEIMPLSQRTQK 349
           ++NG   PS+    +PL QR+ +
Sbjct: 128 ELNGEVFPSKMDHQLPLKQRSSE 150


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 114 QPSIPILPXFQVD 152
           QPSIP+ P F  D
Sbjct: 114 QPSIPLEPDFTSD 126


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,179
Number of Sequences: 438
Number of extensions: 2948
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12066642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)