Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_I07
         (393 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha...    27   0.79 
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    27   1.4  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    27   1.4  
SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch...    25   5.5  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    24   7.3  
SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|...    24   9.7  
SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe...    24   9.7  

>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
           Prh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 719

 Score = 27.5 bits (58), Expect = 0.79
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 378 ITLTRLLHPHVAFGALIGKHTTKAHTNS 295
           IT T LLHP  ++  +IG  T   H +S
Sbjct: 645 ITNTALLHPDGSYRTIIGNQTISIHPSS 672


>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 134 LFLFHLFYICDTYINNLIFIANILTIKLN 48
           LF FH+F  C+   NNL +  N+L   LN
Sbjct: 319 LFTFHVF--CNQLSNNLAYQQNLLFTSLN 345


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 11/17 (64%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
 Frame = -3

Query: 388 FFHNNP-DATPPPTCSI 341
           F +NNP  ATPPP CS+
Sbjct: 370 FNNNNPATATPPPACSL 386


>SPAC1006.02 |||WD repeat protein, human GNB1L
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +2

Query: 311 FVVCLPMSAPNATCGWRSRVRVIM 382
           FV+C  +++    C WR+  + I+
Sbjct: 36  FVICWCLTSMRPKCAWRAHTKTIL 59


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 328 DERAKCYMWVEES 366
           DER KCY +V ES
Sbjct: 18  DERYKCYFYVNES 30


>SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 104

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 11/19 (57%), Positives = 12/19 (63%), Gaps = 3/19 (15%)
 Frame = -3

Query: 151 CRFPLFYFYFI---YFTSV 104
           C FPLF F FI   YFT +
Sbjct: 59  CDFPLFNFLFIAIPYFTEI 77


>SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 377

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 382 HNNPDATPPPTCSIWRA 332
           H++P A PPP C + +A
Sbjct: 77  HDHPLANPPPGCPMHKA 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,396,165
Number of Sequences: 5004
Number of extensions: 22567
Number of successful extensions: 40
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)