Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_I07
         (393 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0548 + 23789567-23789585,23789938-23790306,23790410-237904...    27   5.4  
08_02_1017 - 23616244-23616381,23616471-23616537,23617160-236172...    27   7.1  
07_01_1013 - 8593690-8595006,8595275-8595928,8595951-8596065,859...    26   9.4  

>02_04_0548 +
           23789567-23789585,23789938-23790306,23790410-23790495,
           23791487-23791574,23791696-23791826
          Length = 230

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 319 VFTDERAKCYMWVEESRQG 375
           +F+DE AKC+ W ++  +G
Sbjct: 93  IFSDETAKCHEWAKDGVEG 111


>08_02_1017 -
           23616244-23616381,23616471-23616537,23617160-23617238,
           23617330-23617486,23617581-23617719,23617820-23617872,
           23618037-23618120,23618291-23618359,23618488-23618553,
           23618657-23618800,23619331-23619414,23619498-23619596,
           23620097-23620219,23620745-23621290
          Length = 615

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -2

Query: 344 HLARSS-VNTRRRHTLTRNPRSCKSISSSPRR 252
           HL RSS     R  ++T   RSC S SSSP R
Sbjct: 27  HLPRSSHFRLARPSSITDVSRSCSSSSSSPPR 58


>07_01_1013 -
           8593690-8595006,8595275-8595928,8595951-8596065,
           8596560-8596861,8596884-8597369
          Length = 957

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = -2

Query: 341 LARSSVNTRRRHTLTRNPRSCKSISSSPRR 252
           L+ SSV T+R H++   P S +S+++SP +
Sbjct: 388 LSPSSVGTKRSHSMRSTP-STRSMATSPSK 416


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,762,433
Number of Sequences: 37544
Number of extensions: 140880
Number of successful extensions: 285
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)