Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_I06
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr 3|||M... 53 3e-08
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 34 0.015
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 33 0.036
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 32 0.062
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 31 0.19
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 29 0.58
SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch... 28 1.0
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 28 1.3
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom... 28 1.3
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos... 27 1.8
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 27 1.8
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 27 1.8
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|... 27 2.3
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 3.1
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi... 26 4.1
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 26 4.1
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces... 26 4.1
SPAC6B12.13 |||protein phosphatase inhibitor |Schizosaccharomyce... 26 5.4
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |... 26 5.4
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S... 26 5.4
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 25 7.2
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 25 7.2
SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S... 25 7.2
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M... 25 9.5
SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran... 25 9.5
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo... 25 9.5
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 25 9.5
>SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr
3|||Manual
Length = 325
Score = 53.2 bits (122), Expect = 3e-08
Identities = 35/120 (29%), Positives = 65/120 (54%), Gaps = 3/120 (2%)
Frame = +3
Query: 276 KQLLRQL--FLKSNVDLGGLAQIIISQNYIGSVVKQCLXXXXXXXXXXXXXXXXVFGVTT 449
K LL+QL + +NV+L LA +I+SQ +GS VK + + +
Sbjct: 87 KNLLKQLLGYDHTNVNLSALADLILSQPLLGSTVK------------VDGNNSDPYAMLS 134
Query: 450 VVNITKRKNEPSVAQIRE-LLTKLSQENADPRTKELIKYILADDSQHTGLVINERILNIP 626
V+N+ R++EP + Q+ ++++L++ N+ EL K + + GL++NER++N+P
Sbjct: 135 VINLNTRRDEPVIKQLTSYIISRLAKSNSRLEN-ELQKLLEPNSGSQVGLIVNERLINMP 193
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 34.3 bits (75), Expect = 0.015
Identities = 18/60 (30%), Positives = 38/60 (63%), Gaps = 5/60 (8%)
Frame = +2
Query: 98 KMPNKK----NKEIDTNSES-EKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSD 262
++P KK +++ +++SES E+E+++ SE+DS+ + E E +++ E + E+SD
Sbjct: 68 EVPKKKAVAASEDSESDSESSEEEEETESEEDSEVSDESESESESESESEEESESEEESD 127
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 33.1 bits (72), Expect = 0.036
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 83 FVYFAKMPNKKNKEIDTNSESEKEQDSGSEKDSDFDSDGN 202
F +F+K+PN K ++ D+ S DS + +D D+ N
Sbjct: 26 FGFFSKIPNVKQEKSDSTLSSSSNHDSNHDTPADVDNSSN 65
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 32.3 bits (70), Expect = 0.062
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = +2
Query: 125 IDTNSESEKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSDFHG 271
+ +++ E+E++ E + +FD +G E+E + D +G D D G
Sbjct: 170 VQPDADEEEEEEEADEMEEEFDEEGEGDEEEEEEDDGDGDGEGDGDGEG 218
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/49 (24%), Positives = 24/49 (48%)
Frame = +2
Query: 107 NKKNKEIDTNSESEKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPE 253
++ +E D E ++E++ + D D + DG+ GE + + E E
Sbjct: 184 DEMEEEFDEEGEGDEEEEEEDDGDGDGEGDGDGEGENDGKGSEEEEEEE 232
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 30.7 bits (66), Expect = 0.19
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +3
Query: 471 KNEPSVAQIRELLTKLSQENADPRTKELIKYILADDSQHTGLVINERILNIPA 629
KN PS + I +L+ + E+ R + LIK + D NE++ +P+
Sbjct: 15 KNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNEKLATVPS 67
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 29.1 bits (62), Expect = 0.58
Identities = 12/50 (24%), Positives = 28/50 (56%)
Frame = +2
Query: 122 EIDTNSESEKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSDFHG 271
E+D + ++K++D + ++++ ++D N E++ + D E ED G
Sbjct: 84 EVDNVNNNDKKEDEDNVEENEEEADANEEEEEDEEDDEEDEEDEDESGGG 133
>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 244
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 245 YVLRNQPVALFHRHSCRLNQNQNLFRCL 162
Y+LR+ P + F+R+S + N N FR L
Sbjct: 18 YILRHLPFSNFNRYSTASHDNVNAFRLL 45
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +3
Query: 252 KIVTSTXIKQLLRQLFLKSNVDLGGL 329
K +TST ++ LR+LF+K NV L L
Sbjct: 321 KYMTSTEVRNHLRRLFVKENVVLSRL 346
>SPAC1486.09 |||ribosome biogenesis protein Nob1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 107 NKKNKEIDTNSESEKEQDSGSEKDSD 184
+ NKE N+E KEQ+ E D D
Sbjct: 163 HSNNKEAHPNTEENKEQEDNEEDDED 188
>SPAC222.06 |mak16||nuclear HMG-like acidic protein
Mak16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +2
Query: 137 SESEKEQDSGSEKDSDFDSD 196
SESE+E+ S SE D D D D
Sbjct: 239 SESEEEESSESESDEDEDED 258
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 27.5 bits (58), Expect = 1.8
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Frame = +2
Query: 143 SEKEQDSGSEKDSDFDSDG-NYVGEKELQADFEGRNPEDSDFHGY*AATEATVSEIKC*P 319
+E + GSE DSD DSD + V +LQ + RN + T+ + E K P
Sbjct: 434 NEPSDEIGSENDSDSDSDSDSSVPLSQLQKKSQQRNSVSHEIQN--RGTKGSPKEPKAKP 491
Query: 320 WRASPNYYITKLHRQCCE 373
P + T + + E
Sbjct: 492 STERPETHRTLSYSRLSE 509
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/37 (37%), Positives = 25/37 (67%)
Frame = +2
Query: 122 EIDTNSESEKEQDSGSEKDSDFDSDGNYVGEKELQAD 232
+I T+++ +K ++ G E SD D DGNY+ K L+++
Sbjct: 22 DIATDNQKDKHENVG-ENVSDED-DGNYIASKLLESN 56
>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
Alp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 27.1 bits (57), Expect = 2.3
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Frame = +3
Query: 441 VTTVVNITKRKNEPSVA-QIRELLTK-LSQENADPRTKELIKYILADDSQHTGLVINERI 614
++ VVN T+ K + Q+ LT+ L++ DP ++++ Y+L + S+ ++NE I
Sbjct: 239 ISHVVNATRSKKKVCKGGQVISFLTESLTKYAGDPVARKILTYLLREASRPYTKMLNEWI 298
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/55 (21%), Positives = 24/55 (43%)
Frame = +2
Query: 98 KMPNKKNKEIDTNSESEKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSD 262
K+ KK D++SES + S+ + + V + E + + + DS+
Sbjct: 155 KIEEKKESSSDSSSESSSSESESESSSSESEEEEEVVEKTEEKKEGSSESSSDSE 209
>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
Gap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 766
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/28 (35%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -2
Query: 511 VSNSLICATLGSFFLL-VIFTTVVTPKT 431
+S+S IC+ +G FF L + +++P+T
Sbjct: 324 ISDSTICSLIGGFFFLRFVNPAIISPQT 351
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 26.2 bits (55), Expect = 4.1
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = +2
Query: 92 FAKMPNKKNKEIDTN----SESEKEQDSGSEKDSDFDSDGNYVGEKELQADFEG 241
F PN K+ ++ + S+S K S E +S FD G + + +ADF G
Sbjct: 85 FLAPPNDKDSPVNQSPWKRSDSSKRSSSQDEFESLFDRYGQLSLKDDGKADFRG 138
>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +2
Query: 116 NKEIDTNSESEKEQDSGSEKDSDFDS 193
N ++ + ES +++DS S+ DS+ +S
Sbjct: 90 NSSLENDEESSQQEDSSSKSDSEEES 115
>SPAC6B12.13 |||protein phosphatase inhibitor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 104
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 101 MPNKKNKEIDTNSESEKEQDSGSEKDSDFDSDGN 202
M KK+K + K +S S+ DSD DSD +
Sbjct: 58 MNKKKSKVCCIFHKQRKFDESSSDSDSDSDSDSS 91
>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 661
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +3
Query: 447 TVVNITKRKNEPSVAQIRELLTKLSQENADPRTKELIKYILADDSQH 587
T N+ N PSV + ++ NAD + E IK ++ +S +
Sbjct: 358 TADNMNTWDNTPSVENVESANENVNNHNADEQMDEKIKSLVEGNSAY 404
>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.8 bits (54), Expect = 5.4
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +2
Query: 95 AKMPNKKNKEIDTNSESEKEQDSGSEKDSDFDSDGNYVGEKELQAD 232
A+ PN K+ K DS E D++ S GNY + EL D
Sbjct: 221 AQNPNNKSDYEKEYMALRKRYDSNEEPDTEALSQGNYT-QFELSID 265
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/50 (20%), Positives = 23/50 (46%)
Frame = +2
Query: 110 KKNKEIDTNSESEKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDS 259
K++ + D + ++D E ++ DG + +Q++ + NP S
Sbjct: 278 KESLDADKELATNDQEDDEEENQAETQKDGAISNNENMQSEVQTTNPSAS 327
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 25.4 bits (53), Expect = 7.2
Identities = 17/50 (34%), Positives = 30/50 (60%)
Frame = +2
Query: 107 NKKNKEIDTNSESEKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPED 256
++ + EID + +S EQ S +EK + + D N EK+++++ R PED
Sbjct: 37 SRVSDEIDEH-DSIPEQ-SNTEKSIEIN-DKNLEAEKDIESNLSLRPPED 83
>SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein
Sad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 25.4 bits (53), Expect = 7.2
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +2
Query: 119 KEIDTNSESEKEQDSGSEKDSD--FDSDGNYVGEKELQADFEGRNPEDSDFHGY 274
+E N E E +G E ++ ++SDG+ E+ + ++E E+SD GY
Sbjct: 85 QEESDNEEFENVVKNGHEASTNVFYESDGD--DEEFVNEEYENSIDEESDDEGY 136
>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1258
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 556 INSLVLGSAFS*DSFVSNSLICATLGSFFLLVIFTTV 446
I + VLG A + + + ATLGSF L ++F +
Sbjct: 1096 ILATVLGKAALISNHWTQYTVIATLGSFLLWIVFMPI 1132
>SPCC417.11c |||glutamate-1-semialdehyde
2,1-aminomutaseaminotransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 435
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 191 SDGNYVGEKELQADFEGRNPEDSDFH 268
SD + EK +A F RNP+ +DFH
Sbjct: 6 SDLSLAKEKS-EAQFIARNPKSNDFH 30
>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +2
Query: 110 KKNKEIDTNSESEKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDS 259
KK TNS ++ + + +KD +++ N +K+ +F N DS
Sbjct: 54 KKLLREKTNSGAKLAEKNSDDKDQLTENNDNLYNDKKSNGNFYDTNKTDS 103
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/54 (24%), Positives = 25/54 (46%)
Frame = +3
Query: 471 KNEPSVAQIRELLTKLSQENADPRTKELIKYILADDSQHTGLVINERILNIPAA 632
K PS + I +L+ + E R + LI + + + NE++ +P+A
Sbjct: 15 KQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNEKLSTVPSA 68
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,140,108
Number of Sequences: 5004
Number of extensions: 38223
Number of successful extensions: 204
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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