Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_I04
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    26   5.0  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   6.6  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    25   8.7  
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo...    25   8.7  

>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 174 LIFFIHLKTT*FDRDENVRLILNQHGKPG 260
           L +FIH K T   + +N+ +I + H  PG
Sbjct: 146 LYYFIHKKVTNDSQWQNIEVIFSGHDCPG 174


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 356  PSLKTRKKINARTRKRSRLKIKMCKHR 436
            P + +RKKI    RKR   K K   HR
Sbjct: 2458 PEVASRKKIRKNERKRENRKQKTNHHR 2484


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -3

Query: 547 RRTPIHRLLLLFAC-SLSQSLASAGSPVSSQRDSVCLRSVLAHFY 416
           RR+ I++L LL  C S  +   S G  ++S  DS+ ++   A FY
Sbjct: 168 RRSNIYQLCLLLLCISKLKPGESVGCHINSFLDSMFVKEQKAAFY 212


>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
           Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 686

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 395 RKRSRLKIKMCKHRTKTNRIPL 460
           RK S+  ++  K RT+TN +PL
Sbjct: 5   RKASKNSVRGRKRRTRTNNLPL 26


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,962,250
Number of Sequences: 5004
Number of extensions: 31633
Number of successful extensions: 89
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)