Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_I04
         (615 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024761-6|AAF59467.3|  599|Caenorhabditis elegans Hypothetical ...    31   0.86 
AC024761-5|AAU05550.1|  601|Caenorhabditis elegans Hypothetical ...    31   0.86 
U80450-4|AAB37829.1|  926|Caenorhabditis elegans Hypothetical pr...    30   1.1  
U80838-7|AAC71112.3|  581|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z77738-1|CAB01297.1|   89|Caenorhabditis elegans PP1-like Ser/Th...    29   2.6  

>AC024761-6|AAF59467.3|  599|Caenorhabditis elegans Hypothetical
           protein Y38C1AA.5a protein.
          Length = 599

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 208 LIETRMFDSF*ISTENREIMVSADLTTASPTTMSE 312
           + E R+FDS  +  ENR+  V  +  + SP T SE
Sbjct: 531 MTEMRLFDSVNVELENRDSNVKTEQLSTSPETCSE 565


>AC024761-5|AAU05550.1|  601|Caenorhabditis elegans Hypothetical
           protein Y38C1AA.5b protein.
          Length = 601

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 208 LIETRMFDSF*ISTENREIMVSADLTTASPTTMSE 312
           + E R+FDS  +  ENR+  V  +  + SP T SE
Sbjct: 533 MTEMRLFDSVNVELENRDSNVKTEQLSTSPETCSE 567


>U80450-4|AAB37829.1|  926|Caenorhabditis elegans Hypothetical
           protein M01E11.3 protein.
          Length = 926

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +3

Query: 258 GNYGKRRPNDRQPNDNVGNR 317
           G  GK+RPN RQ NDN+ N+
Sbjct: 736 GAQGKKRPNVRQENDNMKNK 755


>U80838-7|AAC71112.3|  581|Caenorhabditis elegans Hypothetical
           protein F47F6.3 protein.
          Length = 581

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 11/35 (31%), Positives = 25/35 (71%)
 Frame = -2

Query: 299 VGLAVVRSALTIISRFSVLIQNESNILVSIKSSSF 195
           V + V+R  +T+++ F + +Q+ESN +++ K+ S+
Sbjct: 188 VNVLVIRPLVTVVTAFIIKLQSESNQILNSKTLSY 222


>Z77738-1|CAB01297.1|   89|Caenorhabditis elegans PP1-like Ser/Thr
           protein phosphataseprotein.
          Length = 89

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 196 KLLDLIETRMFDSF*ISTENREIMVSADLTTASPTTMSETERKSLT 333
           + LDL+E + F    I    +  + SA+ T A P+T+S    K+ T
Sbjct: 17  EFLDLVELKNFQFNIIPGTQKTSLCSAETTNAQPSTVSTDSTKNAT 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,955,777
Number of Sequences: 27780
Number of extensions: 179180
Number of successful extensions: 536
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)