Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_H21
         (496 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132876-13|CAD21665.1|  117|Caenorhabditis elegans Hypothetical...   176   6e-45
U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z82272-6|CAB05222.1| 1431|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical pr...    27   9.9  
AF025472-7|AAB71069.1| 1466|Caenorhabditis elegans Hypothetical ...    27   9.9  
AC024749-1|AAF60434.1| 1466|Caenorhabditis elegans Hypothetical ...    27   9.9  
AC006656-1|AAF39881.1|  592|Caenorhabditis elegans Hypothetical ...    27   9.9  

>AL132876-13|CAD21665.1|  117|Caenorhabditis elegans Hypothetical
           protein Y105E8A.16 protein.
          Length = 117

 Score =  176 bits (429), Expect = 6e-45
 Identities = 78/101 (77%), Positives = 95/101 (94%)
 Frame = +3

Query: 168 HRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTW 347
           HRIR+TLTS+NV+ LEKVCA LI+GAK + L VKGP+RMPTK+LRITTRKTPCGEGSKTW
Sbjct: 17  HRIRLTLTSQNVKPLEKVCAQLIDGAKNEHLIVKGPIRMPTKVLRITTRKTPCGEGSKTW 76

Query: 348 DRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIAD 470
           DRFQMRIHKR+I+LH+P+E+++QITSI+IEPGV++EVT AD
Sbjct: 77  DRFQMRIHKRLINLHAPAEVLRQITSISIEPGVDIEVTRAD 117


>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical
           protein H03E18.1 protein.
          Length = 1147

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 210 LEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGE 332
           +E V A  + G KK+  + K   + PTK    +T++ P  E
Sbjct: 359 VELVTAKTVEGEKKETKKPKSTTKKPTKTAAASTKRPPTTE 399


>Z82272-6|CAB05222.1| 1431|Caenorhabditis elegans Hypothetical protein
            F55G11.9 protein.
          Length = 1431

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 496  YFIGGSAYASAMVTSTSTPGSMLIEVICFT 407
            YF+    Y +A + +T T GS+L+ V C T
Sbjct: 961  YFVS-LVYLTASLINTPTKGSLLLYVFCLT 989


>Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical
           protein R10E11.1b protein.
          Length = 2056

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 19/58 (32%), Positives = 26/58 (44%)
 Frame = +2

Query: 140 KPQAEVSPYPPHQDHSYFSQCALAREGLC*PNQWSQETEAACKGPSPHANQDPAYHHP 313
           +PQA    YPP Q ++ F++  +   G   PN  S  +     GPSP   Q P    P
Sbjct: 116 RPQA----YPPGQQNA-FNRSPMMPNGT--PNMMSPPSMGRVPGPSPGGPQPPGPGQP 166


>Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical
           protein R10E11.1a protein.
          Length = 2045

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 19/58 (32%), Positives = 26/58 (44%)
 Frame = +2

Query: 140 KPQAEVSPYPPHQDHSYFSQCALAREGLC*PNQWSQETEAACKGPSPHANQDPAYHHP 313
           +PQA    YPP Q ++ F++  +   G   PN  S  +     GPSP   Q P    P
Sbjct: 116 RPQA----YPPGQQNA-FNRSPMMPNGT--PNMMSPPSMGRVPGPSPGGPQPPGPGQP 166


>AF025472-7|AAB71069.1| 1466|Caenorhabditis elegans Hypothetical
            protein ZK250.9 protein.
          Length = 1466

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 18/67 (26%), Positives = 30/67 (44%)
 Frame = +3

Query: 141  NPRQRSPLIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKT 320
            NP Q +   +R+  TL  +  R+ +++ A L + +  +   + GP R     L IT    
Sbjct: 1008 NPAQCASEGNRLLATLNDQQKRAADQILAALDDASLPRLFYLDGPGRSGKTYLYITLYNI 1067

Query: 321  PCGEGSK 341
              G G K
Sbjct: 1068 CVGRGLK 1074


>AC024749-1|AAF60434.1| 1466|Caenorhabditis elegans Hypothetical
            protein Y16E11A.2 protein.
          Length = 1466

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 18/67 (26%), Positives = 30/67 (44%)
 Frame = +3

Query: 141  NPRQRSPLIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKT 320
            NP Q +   +R+  TL  +  R+ +++ A L + +  +   + GP R     L IT    
Sbjct: 1008 NPAQCASEGNRLLATLNDQQKRAADQILAALDDASLPRLFYLDGPGRSGKTYLYITLYNI 1067

Query: 321  PCGEGSK 341
              G G K
Sbjct: 1068 CVGRGLK 1074


>AC006656-1|AAF39881.1|  592|Caenorhabditis elegans Hypothetical
           protein H12I13.1 protein.
          Length = 592

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 195 RNVRSLEKVC-ADLINGAKKQKLRVKGPVRMPTKILRITTRKT 320
           R+ +S  KVC   L  GAKK++        +  KIL IT  KT
Sbjct: 364 RDNKSSNKVCRTSLSGGAKKKRKERNARSEVGDKILGITETKT 406


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,103,511
Number of Sequences: 27780
Number of extensions: 234565
Number of successful extensions: 576
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)