Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_H19
         (448 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.09 |tif223||translation initiation factor eIF2B|Schizosa...    49   3e-07
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon...    28   0.75 
SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces pomb...    28   0.75 
SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr 2...    26   3.0  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   7.0  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        24   9.3  

>SPAC4D7.09 |tif223||translation initiation factor
           eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 49.2 bits (112), Expect = 3e-07
 Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
 Frame = +1

Query: 160 LEFQVVVLAAGKGSRMPDVGG-SVSKCLLPVGPYPVLWYPLNMLEKIGFQDVMIVVLDED 336
           +EFQ VV A    S  P  G  ++ K LLP+G  P+L YPL  LE  GF   +++ ++E 
Sbjct: 37  IEFQAVVFAGFGNSLYPLTGSDALPKALLPIGNKPMLHYPLYWLEAAGFTSAILICMEEA 96

Query: 337 KSNI 348
           +++I
Sbjct: 97  EAHI 100


>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 27.9 bits (59), Expect = 0.75
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +1

Query: 169 QVVVLAAGKGSRMPDVGGSVSKCLLPVGPYPVLWYPLNMLEKIGFQDVMI 318
           Q +VL+     R   +     +CLLP+   P++ Y    L   G Q+V +
Sbjct: 19  QAIVLSDSYNYRFRPLTLDKPRCLLPLANTPLIEYTFEFLALAGVQEVYV 68


>SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 27.9 bits (59), Expect = 0.75
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
 Frame = +1

Query: 289 EKIGFQDVMIVVLD----EDKSNILNALEKCPLKIKYELIVIPSXED 417
           EK+ +  ++ VVL+    ED +N+ + + KC L I  E + IP+  D
Sbjct: 335 EKVAYGTLVQVVLEDWPLEDFNNLASFMAKCHLPITLEELGIPNVTD 381


>SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 518

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 261 STMVSIKYARKNWISR 308
           ST VS+K AR+NWI R
Sbjct: 283 STGVSMKKARENWIER 298


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 10/18 (55%), Positives = 11/18 (61%), Gaps = 2/18 (11%)
 Frame = +3

Query: 282 YARKNWIS--RCNDCGTR 329
           Y    WIS  RCNDC +R
Sbjct: 337 YPYNTWISTIRCNDCNSR 354


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = -2

Query: 174  NLEF*DFMHFLLQVKMMFLKSKQTVNRRLSDFRDIYMVFLSVH*YSCY 31
            N EF + M+F+L +    L S +T  + +  F+++      +   SC+
Sbjct: 3762 NDEFLNLMNFVLNLFDSLLSSIETATKNMRTFKELAETSSFIEMSSCF 3809


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,788,926
Number of Sequences: 5004
Number of extensions: 35951
Number of successful extensions: 83
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)