Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_H19
(448 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0238 - 13357877-13357954,13358186-13358302,13358537-133586... 60 1e-09
11_06_0181 + 20985960-20987825,20987904-20989169 29 2.3
08_02_1448 - 27168389-27172021 28 3.0
11_06_0153 - 20693663-20693689,20693808-20694096,20694493-206948... 28 3.9
06_01_0607 - 4390830-4391510,4391712-4391882,4391970-4392086,439... 27 5.2
02_02_0374 + 9538478-9540385 27 5.2
01_06_0051 + 25988439-25989068,25989445-25989693,25989952-259900... 27 5.2
04_04_1320 - 32623378-32623949,32624035-32624451,32624548-326248... 27 6.9
06_01_1135 - 9379361-9381018,9381356-9381665,9381811-9382764 27 9.1
04_01_0246 + 3225743-3226473,3226493-3226624,3227580-3227670,322... 27 9.1
03_01_0307 + 2414709-2414762,2415769-2415841,2416090-2416154,241... 27 9.1
02_05_0042 + 25351648-25351724,25351983-25352010,25352311-253523... 27 9.1
02_02_0447 + 10363077-10363245,10363419-10363519,10363947-103641... 27 9.1
>06_02_0238 -
13357877-13357954,13358186-13358302,13358537-13358641,
13359301-13359393,13359801-13359888,13359979-13360028,
13361147-13361205,13361297-13361516,13361611-13361691,
13364034-13364111,13364203-13364298,13364370-13364435
Length = 376
Score = 59.7 bits (138), Expect = 1e-09
Identities = 34/97 (35%), Positives = 55/97 (56%), Gaps = 1/97 (1%)
Frame = +1
Query: 160 LEFQVVVLAAGKGSRM-PDVGGSVSKCLLPVGPYPVLWYPLNMLEKIGFQDVMIVVLDED 336
++FQVVVLA G ++ P V V K LLPV PVL Y L++LE +D+++VV ++
Sbjct: 1 MDFQVVVLAGGTSEKLSPLVSKDVPKALLPVANRPVLSYVLDLLEASDLKDIIVVVEGQE 60
Query: 337 KSNILNALEKCPLKIKYELIVIPSXEDWGTANSLKHV 447
+ ++ A + + V+ ED GTA +L+ +
Sbjct: 61 AARLVGAWASSAYLDRLLVEVVAVPEDIGTAGALRAI 97
>11_06_0181 + 20985960-20987825,20987904-20989169
Length = 1043
Score = 28.7 bits (61), Expect = 2.3
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +3
Query: 249 WAV-PSTMVSIKYARKNWISRCNDCGTR 329
W + P Y ++N+++RC+DCG R
Sbjct: 169 WTICPHCQKRFLYYQRNFLARCSDCGKR 196
>08_02_1448 - 27168389-27172021
Length = 1210
Score = 28.3 bits (60), Expect = 3.0
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +3
Query: 177 RVGRWKRFPYARCRRISFEMSPTCWAVPSTMVSIKYARKNWISRCN 314
R+G WK F + I +S CW + S+ + R +I C+
Sbjct: 1004 RLGLWKCFAFVEVLHIHMCLSLVCWPT-EELTSLIHLRHLYIEHCH 1048
>11_06_0153 -
20693663-20693689,20693808-20694096,20694493-20694829,
20695304-20696516,20700247-20700744
Length = 787
Score = 27.9 bits (59), Expect = 3.9
Identities = 8/14 (57%), Positives = 13/14 (92%)
Frame = +3
Query: 282 YARKNWISRCNDCG 323
Y ++N+++RCNDCG
Sbjct: 171 YYQRNFLARCNDCG 184
>06_01_0607 -
4390830-4391510,4391712-4391882,4391970-4392086,
4392314-4392573,4393346-4393760
Length = 547
Score = 27.5 bits (58), Expect = 5.2
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +1
Query: 226 VSKCLLPVGPYPVLWYPLNMLEKIGFQDVMIVVLDEDKSNILNALEKCPLKIKYELIVIP 405
+S+ LL + L L + K+G D V+DE S ++N ++ PL + + P
Sbjct: 357 LSQLLLSLSGMLDLILVLRLNLKLGIPDYYFAVIDEGVSKMINRIKWMPLLVLSSKLCPP 416
Query: 406 SXE 414
E
Sbjct: 417 GIE 419
>02_02_0374 + 9538478-9540385
Length = 635
Score = 27.5 bits (58), Expect = 5.2
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +1
Query: 220 GSVSKCLLPVGPYPVLWYPLNMLEKIGFQDVMIVVLDEDKSNILNALEKCPLK 378
G S L+P P+ V +P LEK Q V+ ++L E N LE+ LK
Sbjct: 242 GHGSMALMPTNPFDVNPWPPPTLEKYRSQAVVHMLLFETLFNEELRLERIELK 294
>01_06_0051 +
25988439-25989068,25989445-25989693,25989952-25990074,
25990246-25990464
Length = 406
Score = 27.5 bits (58), Expect = 5.2
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Frame = +1
Query: 163 EFQVVVLAAGKGSRMP----DVGGSVSKCLLPVGPYPVLWYPLNMLEKIGFQDVMIVVLD 330
+F ++LA G S +P D G ++ + P+P W N L +GF ++
Sbjct: 315 QFDTIILATGYRSNVPSWLKDAGDLFTREGISKVPFPNSWRGRNGLYTVGFTQRGLLGTS 374
Query: 331 EDKSNI 348
D N+
Sbjct: 375 SDALNV 380
>04_04_1320 -
32623378-32623949,32624035-32624451,32624548-32624895,
32625671-32625768,32625882-32626051,32627134-32627418,
32628041-32628119,32628481-32628623,32629227-32629634
Length = 839
Score = 27.1 bits (57), Expect = 6.9
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 244 PVGPYPVLWYPLNMLEKIGFQDV 312
P G PV WYP + +K+ D+
Sbjct: 649 PGGRLPVTWYPASFADKVSMTDM 671
>06_01_1135 - 9379361-9381018,9381356-9381665,9381811-9382764
Length = 973
Score = 26.6 bits (56), Expect = 9.1
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +1
Query: 283 MLEKIGFQDVMIVVLDEDKSNILNALEKCPLKIKY 387
ML + F D V E +L LE CP IKY
Sbjct: 371 MLTTMKFNDSDDPVAAEKAGEVLKNLENCPKNIKY 405
>04_01_0246 +
3225743-3226473,3226493-3226624,3227580-3227670,
3228617-3229074,3229342-3229864
Length = 644
Score = 26.6 bits (56), Expect = 9.1
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = +3
Query: 222 ISFEMSPTCWAVPSTMV 272
I+F+MSP CW+ P +++
Sbjct: 216 ITFDMSPGCWSPPCSLL 232
>03_01_0307 +
2414709-2414762,2415769-2415841,2416090-2416154,
2416288-2416365,2416880-2416999,2418021-2418091,
2418808-2418900,2419242-2419311,2420236-2420436,
2421345-2421557,2422354-2422440,2422441-2422652,
2422901-2423042,2423424-2423592,2424050-2424126,
2424393-2424563,2425095-2425171,2425299-2425401,
2426066-2426185,2426301-2426444,2426826-2426975,
2427398-2427541,2427816-2427903,2428672-2428799,
2429329-2429533,2429843-2430015,2430174-2430392,
2430490-2430684
Length = 1213
Score = 26.6 bits (56), Expect = 9.1
Identities = 9/33 (27%), Positives = 24/33 (72%)
Frame = -1
Query: 319 QSLHLEIQFFLAYLMDTIVLGTAQQVGDISKLI 221
+++H+E+Q F+ +DT++ T ++ D+S+++
Sbjct: 416 ETIHMEVQDFVQDKLDTMLRTTFRKKKDLSRIL 448
>02_05_0042 +
25351648-25351724,25351983-25352010,25352311-25352373,
25352880-25352945,25353029-25353076,25353338-25353379,
25353499-25353714,25354066-25354188,25354352-25354564,
25354930-25355016,25355259-25355507,25356386-25356507,
25357135-25357225,25358467-25358882,25359489-25359609
Length = 653
Score = 26.6 bits (56), Expect = 9.1
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 298 GFQDVMIVVLDEDKSNILNALEKCPLKIKYELI 396
G + ++ L+ED N +A E+C + YEL+
Sbjct: 67 GTRAEVVTGLEEDLHNAKSAFERCRFNLGYELL 99
>02_02_0447 +
10363077-10363245,10363419-10363519,10363947-10364140,
10364223-10364634
Length = 291
Score = 26.6 bits (56), Expect = 9.1
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +2
Query: 134 TCSRKCIKS*NSKLSCWPLEKVPVCQMS--EDQFRNVSYLLGRTQYYG 271
+C+ KC + NSK S L + +M +D++R +Y + +Y G
Sbjct: 234 SCAAKCASTYNSKSSVCQLSDSELARMRKVQDEYRIYNYCVDPKRYNG 281
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,882,682
Number of Sequences: 37544
Number of extensions: 217345
Number of successful extensions: 515
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -