Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_H19
         (448 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14521-1|AAA64269.1|  360|Caenorhabditis elegans ppp-1 protein.        60   5e-10
AC006608-3|AAF39757.1|  404|Caenorhabditis elegans Pyrophosphory...    60   5e-10
U42833-6|AAA83581.1| 1650|Caenorhabditis elegans Hypothetical pr...    28   3.6  
Z73972-6|CAI46600.1|  262|Caenorhabditis elegans Hypothetical pr...    27   8.2  
AC024776-7|AAK68469.1|  411|Caenorhabditis elegans Nuclear pore ...    27   8.2  
AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore ...    27   8.2  

>U14521-1|AAA64269.1|  360|Caenorhabditis elegans ppp-1 protein.
          Length = 360

 Score = 60.5 bits (140), Expect = 5e-10
 Identities = 38/100 (38%), Positives = 55/100 (55%), Gaps = 6/100 (6%)
 Frame = +1

Query: 163 EFQVVVLAAGKGSRMPDVGGSVSKCLLPVGPYPVLWYPLNMLEKIGFQDVMIVVLD---- 330
           E Q ++L +G G+RMP +   V KCLLPV   P+  YPL+ L + G  D+ I V +    
Sbjct: 3   EMQGILLCSGGGTRMPVLTRHVQKCLLPVVGVPMFLYPLSSLLRTGITDIKIFVREVLQL 62

Query: 331 --EDKSNILNALEKCPLKIKYELIVIPSXEDWGTANSLKH 444
             E +      LEK P  I+Y   +  + ED+GTA+ LK+
Sbjct: 63  TLEKEVKKSKLLEKYPAHIEY---ICVNQEDFGTADLLKN 99


>AC006608-3|AAF39757.1|  404|Caenorhabditis elegans
           Pyrophosphorylase family protein 1 protein.
          Length = 404

 Score = 60.5 bits (140), Expect = 5e-10
 Identities = 38/100 (38%), Positives = 55/100 (55%), Gaps = 6/100 (6%)
 Frame = +1

Query: 163 EFQVVVLAAGKGSRMPDVGGSVSKCLLPVGPYPVLWYPLNMLEKIGFQDVMIVVLD---- 330
           E Q ++L +G G+RMP +   V KCLLPV   P+  YPL+ L + G  D+ I V +    
Sbjct: 3   EMQGILLCSGGGTRMPVLTRHVQKCLLPVVGVPMFLYPLSSLLRTGITDIKIFVREVLQL 62

Query: 331 --EDKSNILNALEKCPLKIKYELIVIPSXEDWGTANSLKH 444
             E +      LEK P  I+Y   +  + ED+GTA+ LK+
Sbjct: 63  TLEKEVKKSKLLEKYPAHIEY---ICVNQEDFGTADLLKN 99


>U42833-6|AAA83581.1| 1650|Caenorhabditis elegans Hypothetical
           protein ZK430.1 protein.
          Length = 1650

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 19/70 (27%), Positives = 28/70 (40%)
 Frame = -1

Query: 307 LEIQFFLAYLMDTIVLGTAQQVGDISKLILRHLAYGNLFQRPTRQLGILRFYAFSTASKD 128
           L I   +  + D  +L T  Q G I KLIL+    GN+F    +    +R      A + 
Sbjct: 371 LAIDVLIETIEDASIL-TGDQAGTILKLILQEGMDGNIFDNKKKLKSNIRAIGMRFAKQF 429

Query: 127 DVFEKQTNCK 98
           D    +   K
Sbjct: 430 DAIHAELKAK 439


>Z73972-6|CAI46600.1|  262|Caenorhabditis elegans Hypothetical
           protein F15H10.10 protein.
          Length = 262

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 51  RLKRPCKYL*NQTDVYLQFVCFS 119
           +LK+ CKY+ N+ D YL+ V  S
Sbjct: 4   KLKKYCKYIPNEYDYYLEPVVLS 26


>AC024776-7|AAK68469.1|  411|Caenorhabditis elegans Nuclear pore
           complex protein protein8, isoform a protein.
          Length = 411

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 194 KVPVCQMSEDQFRNVSYLLGR 256
           K P+ Q++ D+ RN+ YLLGR
Sbjct: 247 KEPLDQITIDKSRNIMYLLGR 267


>AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore
           complex protein protein8, isoform b protein.
          Length = 1090

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 194 KVPVCQMSEDQFRNVSYLLGR 256
           K P+ Q++ D+ RN+ YLLGR
Sbjct: 162 KEPLDQITIDKSRNIMYLLGR 182


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,817,212
Number of Sequences: 27780
Number of extensions: 201760
Number of successful extensions: 430
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)