Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_H19
         (448 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   0.87 
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   2.7  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   6.1  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   6.1  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 0.87
 Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = -3

Query: 275 GY-HSTGYGPTGRRHFETDP 219
           GY HS   G   R H+ETDP
Sbjct: 700 GYLHSVVSGALDRLHYETDP 719


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 337 YLHLVPQSLHLEIQFFLAYLM 275
           YLHL+ Q +H+ I     +LM
Sbjct: 50  YLHLLYQDVHVMIWIGFGFLM 70


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 304 EIQFFLAYLMDTIVLGTAQQVGDISKLI 221
           E +FF  +L D +++ T Q+  +  KLI
Sbjct: 114 EYRFFKPWLGDGLLISTGQKWRNHRKLI 141


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -2

Query: 117 KSKQTVNRRLSDFRD 73
           + +QT+NR+ SD+ D
Sbjct: 164 EEEQTINRKNSDYLD 178


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,141
Number of Sequences: 438
Number of extensions: 2432
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11697255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)