Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_H18
         (332 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    25   2.3  
SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc...    25   4.0  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    24   5.3  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    24   5.3  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    24   5.3  
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    24   5.3  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    24   7.0  
SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolo...    23   9.2  
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun...    23   9.2  
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom...    23   9.2  

>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 267 SHEIDCFTNNEEA*VSPDFRKSAVTCYLQLSTFIKPL 157
           SH+++  TNN    VS + +KS    Y   +T  K L
Sbjct: 153 SHQVEADTNNATEMVSSNAKKSVYPLYYDSATVKKGL 189


>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +2

Query: 224 THASSLLVKQSISCETPMGVRXNPWTPQNEKGNNW 328
           T  S+    +S++C TP       W P   KGN++
Sbjct: 300 TSPSNYRFIESVTCGTPFVYENWEWIPVTIKGNSF 334


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 11/31 (35%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
 Frame = +2

Query: 209  RKSGLTHAS-SLLVKQSISCETPMGVRXNPW 298
            + +G+TH + S+LV+Q +  E P+ ++ NP+
Sbjct: 1057 KMNGVTHETYSILVEQFLQ-EQPLPIKLNPY 1086


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 193 GDSGFSEVWTYSRLFIIGE 249
           GDSG SE W    L + GE
Sbjct: 62  GDSGVSESWVLDFLSVTGE 80


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1275

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +1

Query: 28   PTTAVSLFDPQLFNKILF*LRINTLKPV 111
            P  AV    P + N  LF  RIN  KP+
Sbjct: 1124 PKLAVGFPSPSVLNDTLFRNRINNSKPL 1151


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = +2

Query: 98  H*NQLNLNFQSKSEQPNLLTNGFMNVDSCR*QVTADFRKSGLTHASSLLVKQS 256
           H N  +LN + ++ Q  L   G   V+S +   T+DF KS  TH SS+    S
Sbjct: 17  HDNSSSLNEEIQTSQDPL---GI--VESYQESSTSDFDKSHYTHNSSIAAADS 64


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 307 LWSPWVXANAHRSLTRN*LLH 245
           LWSP +  N  R+L ++ ++H
Sbjct: 763 LWSPTIAGNNKRNLLKDIIIH 783


>SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolog
           Aif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -1

Query: 293 GXGERPSESHTKLI 252
           G  E+P+ES+TKLI
Sbjct: 246 GSDEKPTESYTKLI 259


>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
           Taf7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 8   DDRTRENRRQPCRCLIRNYLTK 73
           DD TREN+RQ    L+R ++++
Sbjct: 327 DDETRENKRQ--NRLVREFISE 346


>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 892

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 12/50 (24%), Positives = 24/50 (48%)
 Frame = -3

Query: 264 HEIDCFTNNEEA*VSPDFRKSAVTCYLQLSTFIKPLVNKLGCSLFD*KFK 115
           H +D     ++A + P+F    +  Y++ +   KP +N   C+    K+K
Sbjct: 631 HIVDIHRLRDDA-MQPEFSTEQLQRYIRYARTFKPKLNTESCAEIVKKYK 679


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,372,600
Number of Sequences: 5004
Number of extensions: 24695
Number of successful extensions: 61
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)