Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_H18
         (332 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067216-5|AAC17523.2|  135|Caenorhabditis elegans Hypothetical ...    27   3.3  
Z35663-14|CAA84733.1|  805|Caenorhabditis elegans Hypothetical p...    27   4.3  
Z70757-1|CAA94805.1|  497|Caenorhabditis elegans Hypothetical pr...    26   5.7  

>AF067216-5|AAC17523.2|  135|Caenorhabditis elegans Hypothetical
           protein C35E7.7 protein.
          Length = 135

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 162 PLVNKLGCSLFD*KFKFNWFQCIYSEL 82
           PL N+ GC +    F+FNW Q  Y E+
Sbjct: 22  PLENECGC-IRQPTFEFNWLQTEYPEI 47


>Z35663-14|CAA84733.1|  805|Caenorhabditis elegans Hypothetical
           protein T04A8.16 protein.
          Length = 805

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
 Frame = +2

Query: 191 QVTADFRK-SGL--THASSLLVKQSISCETPMGVRXNPWTPQNEKGN 322
           ++T D +K SGL  THA +++  + +  +  + V+ NPWT    KGN
Sbjct: 447 KMTEDMQKRSGLVETHAYAVIDIRCVETKRLLKVK-NPWTHSRWKGN 492


>Z70757-1|CAA94805.1|  497|Caenorhabditis elegans Hypothetical
           protein ZK287.1 protein.
          Length = 497

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 213 FRKSAVTCYLQLSTFIKPLVNKLGCSLFD 127
           + K  + C LQ    ++PL+ K  CS+ D
Sbjct: 289 YTKQGILCMLQAGIKVEPLLMKDWCSIMD 317


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,465,412
Number of Sequences: 27780
Number of extensions: 134547
Number of successful extensions: 258
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)