Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_H07
         (433 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-90...    28   2.8  
12_01_1080 + 11241590-11241625,11241723-11242018,11242113-112422...    28   3.7  
01_05_0567 - 23334967-23335006,23335225-23335394                       27   4.9  

>08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-901831,
            901912-902016,902245-902391,903273-903354,903445-903786,
            903873-904177,904259-904435,904799-904852,905171-905254,
            905855-905968,906048-906321,907552-907926,908003-908267,
            908352-908538,908615-909052,909895-909966,910037-910630,
            911471-911623,911700-911828,912326-912657,912705-912840,
            913046-913491,913580-915087,915169-915431,915622-915738,
            915844-916014,916743-916845,916930-916988,918360-918461,
            918560-918649,918727-918877,919745-919830,919926-920102,
            920915-920978,921859-922008,923132-923211,923311-923376,
            924540-924747,925502-925575,925761-925848,926140-926312,
            926541-926609,926698-926741,927074-927167,927290-927366,
            927475-927552,927992-928085
          Length = 3314

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -3

Query: 398  TTLPFKFRISSARQKKKSVANYTFLYWNQINKIYHINIFGFMNLDVFLF 252
            T+LPFKFR+         + +++ +  N +   Y + I+    LD F F
Sbjct: 1843 TSLPFKFRVYRGAVNSDDIDSFSVVDENSVPAGYAVPIYVEEALDEFFF 1891


>12_01_1080 + 11241590-11241625,11241723-11242018,11242113-11242269,
            11242381-11242449,11242551-11243480,11243868-11243906,
            11244414-11244478,11244663-11244768,11244850-11245050,
            11247001-11247201,11247756-11247779,11249425-11249586,
            11249676-11249915,11250267-11250479,11250618-11250968,
            11251041-11251193,11251649-11251858,11252049-11252267,
            11252365-11252482,11252879-11253828,11254023-11254220,
            11254294-11254553,11255316-11255505,11255817-11256169,
            11258278-11258386,11258466-11258615,11258748-11258844,
            11259315-11259415
          Length = 2065

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -3

Query: 398  TTLPFKFRISSARQKKKSVANYTFLYWNQINKIYHINIFG 279
            +T PF+  + SA+   + + +  FL WN   KIY     G
Sbjct: 977  STKPFEDVVKSAQDSLRWLCHKRFLEWNNETKIYSTTPLG 1016


>01_05_0567 - 23334967-23335006,23335225-23335394
          Length = 69

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 63  ALLAFASAKPLLVSYTSPXSCCIYRSGRCCV-HR 161
           ALLA AS  P   + T P +CC+ R  R  V HR
Sbjct: 6   ALLAAASCLPAPRAPTCPTTCCMLRLPRATVTHR 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,990,060
Number of Sequences: 37544
Number of extensions: 113670
Number of successful extensions: 267
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)