Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_H07
         (433 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   3.4  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   3.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   4.5  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    21   7.8  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    21   7.8  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -1

Query: 421 YFYFRKKXQLYHSSSGFQAPGRK 353
           YF   KK Q  +S S  Q PG K
Sbjct: 430 YFLRYKKLQPQYSQSELQMPGVK 452


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -1

Query: 421 YFYFRKKXQLYHSSSGFQAPGRK 353
           YF   KK Q  +S S  Q PG K
Sbjct: 430 YFLRYKKLQPQYSQSELQMPGVK 452


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 18/54 (33%), Positives = 22/54 (40%)
 Frame = +3

Query: 36  KMFKYLIFVALLAFASAKPLLVSYTSPXSCCIYRSGRCCVHRTPGVLCVLCIFS 197
           K FKY     L    S    LVS+  P S  ++      VH    VL +L  FS
Sbjct: 537 KPFKYQGITILEKKPSRSSTLVSFLQPFSNTLWILVMVSVHVVALVLYLLDRFS 590


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +3

Query: 120 SCCIYRSGRCCVHRTPGVLCVLCIFSGC 203
           S C  R  R C +  P  LC+     GC
Sbjct: 44  SRCDGRCQRFCPNVVPKPLCIKICAPGC 71


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +3

Query: 120 SCCIYRSGRCCVHRTPGVLCVLCIFSGC 203
           S C  R  R C +  P  LC+     GC
Sbjct: 44  SRCDGRCQRFCPNVVPKPLCIKICAPGC 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,779
Number of Sequences: 438
Number of extensions: 1578
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)