Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_G24
(514 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch... 154 6e-39
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo... 154 6e-39
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual 27 1.6
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb... 25 5.0
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 25 5.0
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 25 6.7
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ... 25 6.7
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 25 8.8
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|... 25 8.8
>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 154 bits (374), Expect = 6e-39
Identities = 66/102 (64%), Positives = 82/102 (80%)
Frame = +2
Query: 62 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 241
M F+K VK+ YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ V
Sbjct: 1 MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60
Query: 242 TCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTG 367
TCQ+ SR+ GD+++ A+S ELPRYG+K GL N+ AAY+TG
Sbjct: 61 TCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATG 102
>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 154 bits (374), Expect = 6e-39
Identities = 66/102 (64%), Positives = 82/102 (80%)
Frame = +2
Query: 62 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 241
M F+K VK+ YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ V
Sbjct: 1 MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60
Query: 242 TCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTG 367
TCQ+ SR+ GD+++ A+S ELPRYG+K GL N+ AAY+TG
Sbjct: 61 TCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATG 102
>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 27.1 bits (57), Expect = 1.6
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -3
Query: 392 EAVFVLIADQLNMLQHNLSDQPSHHNVATHV 300
EAV + + D + L +LSD+ S+ ++A H+
Sbjct: 169 EAVVLRVIDPSSKLAEDLSDEQSYRSLAEHI 199
>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 840
Score = 25.4 bits (53), Expect = 5.0
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = -1
Query: 190 FVLVLNNEAFTSIIISFPFTTPLEFYLVPLEVLFVLHNFNESHIL---NLSYKVAS 32
F +L T + +SF F+T + + + LF H F+ S ++ N+ Y+V S
Sbjct: 469 FATILAAFGTTLLSLSFVFSTSAQELMSSIIFLFSKHPFDISDVVIVNNIKYEVVS 524
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 25.4 bits (53), Expect = 5.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 496 NNI*XSWSIVDRFNIVFITCDICCASV 416
NNI S I+ RF++ F+ D C SV
Sbjct: 598 NNINMSAPIMSRFDLFFVVLDECNESV 624
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 25.0 bits (52), Expect = 6.7
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +3
Query: 3 PFFLLGVXSVDATL*LRFKIWDSLKL*RTNNTSRGTK*NSRGV 131
PF+ +G S LR +IW SL+ T G SR +
Sbjct: 803 PFYCVGFKSATPEYTLRTRIWASLRTQTLYRTINGFSNYSRAI 845
>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 409
Score = 25.0 bits (52), Expect = 6.7
Identities = 10/41 (24%), Positives = 19/41 (46%)
Frame = +2
Query: 230 NKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAA 352
N+D + + D VC +++ + YG + G +Y A
Sbjct: 231 NRDSWALNEFVKYNKDFFVCQSFAKNMGLYGERTGCMHYVA 271
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 24.6 bits (51), Expect = 8.8
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +3
Query: 3 PFFLLGVXSVDATL*LRFKIWDSLKL*RTNNTSRGTK*NSRGV 131
PF+ +G S LR +IW SL+ T+ G SR +
Sbjct: 899 PFYCIGFKSTAPEYTLRTRIWASLRSQTLYRTASGMMNYSRAL 941
>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 714
Score = 24.6 bits (51), Expect = 8.8
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +2
Query: 77 VVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYN 196
+ K + +YQ K + E T Y RK+ +++ + K N
Sbjct: 485 IEKEEGELTKYQTLVKSKTEILTQLYTRKKQLLEQQGKGN 524
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,080,261
Number of Sequences: 5004
Number of extensions: 41039
Number of successful extensions: 122
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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