Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_G23
         (561 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   3.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   6.4  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    21   6.4  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   8.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   8.5  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 3   GVHPTQGENRRIPPARQVGYVGVEPH 80
           G +PT      +PP R+   VGV+PH
Sbjct: 478 GTYPTLLPQWCLPP-REAPLVGVQPH 502


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 70  LNLTKNSCRSQPAPYLGP 123
           LNL+K S    P P +GP
Sbjct: 875 LNLSKKSPSPSPRPLVGP 892


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -2

Query: 203 VGRWDGCNVLC 171
           V +W GC V+C
Sbjct: 282 VCKWPGCEVIC 292


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 372 NLQNQLPKRNPTERETSEQGRDH 304
           NL NQ+   NP++R T+ +   H
Sbjct: 145 NLINQMLTVNPSKRITASEALKH 167


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 443 KKRMGILQHVTDPPGYKWD 387
           K +M  L H TD   ++WD
Sbjct: 178 KLQMESLSHTTDEMIFQWD 196


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 103 PAPYLGPGQSPVGAIETA 156
           P+P  GPG  P   I+ A
Sbjct: 396 PSPPRGPGGVPTSVIQAA 413


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,898
Number of Sequences: 438
Number of extensions: 3747
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)