Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_G21
         (565 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   1.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.6  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   2.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   4.9  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 374  PPPPPVITRTSDMDPHTVE 430
            P  PP   R  D+D HT++
Sbjct: 976  PSGPPTSIRVDDLDQHTLK 994


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = +2

Query: 218 QTSIGSTEK--PTQVVTPAVNRSQPSAKVTPVKASTVSPAIAT 340
           ++  GST+   P  V T     + P+A  T    +T S  +AT
Sbjct: 205 ESKAGSTDASTPATVTTTGATTTLPAASATGTGPATPSAVVAT 247


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = +2

Query: 233 STEKPTQVVTPAVNRSQPSAKVTPVKASTVSPAIATIDRLLSLGANIPPPPPV 391
           S + P  + T  V+ +   A V   +    SP++        L   +PPPPP+
Sbjct: 332 SRQFPRDLTTQTVSTT---ADVLQEEEEEYSPSVQHEFVTFDLDEPLPPPPPI 381


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +2

Query: 212 VTQTSIGSTEKPTQVVTPAVNRSQPSAKVTPVKASTVSPAIATIDRLLSLGANIPPPP 385
           V++TS    + PT V T   + S        +  STV    A ++    L  +IPPPP
Sbjct: 720 VSRTSTAG-QFPTNVATTVTSMS--------IDQSTVIQTGANVNLWQPLSVSIPPPP 768


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +2

Query: 377 PPPPVITRTSDMDPHTVEQ 433
           PPPP++ R +  D  T+ +
Sbjct: 338 PPPPLVWRRNGADLETLNE 356


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,676
Number of Sequences: 438
Number of extensions: 2365
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)