Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_G19
(455 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch... 182 3e-47
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc... 181 4e-47
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom... 27 1.4
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 26 2.4
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc... 25 4.2
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 25 4.2
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi... 25 5.5
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce... 25 5.5
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro... 25 7.3
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 25 7.3
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 25 7.3
SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr 2|... 24 9.6
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 24 9.6
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 24 9.6
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 24 9.6
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c... 24 9.6
>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 160
Score = 182 bits (442), Expect = 3e-47
Identities = 89/140 (63%), Positives = 102/140 (72%)
Frame = +3
Query: 33 MTNSKGYXPRHQGTCSLAGSXTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHG 212
M +S G R + T G HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHG
Sbjct: 1 MPHSYGIRARTRYTFQ-RGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHG 59
Query: 213 KTGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEA 392
KTG VYNVT ++GV++ K V R + KR+N+R+EHVKHSKCRQDFL RVK NE KEA
Sbjct: 60 KTGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEA 119
Query: 393 XAAGKTVNLKRQPAPPKAAH 452
A GKTV L+RQPAPP AH
Sbjct: 120 KAQGKTVQLRRQPAPPATAH 139
>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 181 bits (441), Expect = 4e-47
Identities = 89/140 (63%), Positives = 102/140 (72%)
Frame = +3
Query: 33 MTNSKGYXPRHQGTCSLAGSXTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHG 212
M +S G R + T G HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHG
Sbjct: 1 MPHSYGIRARTRYTFQ-RGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHG 59
Query: 213 KTGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEA 392
KTG VYNVT ++GV++ K V R + KR+N+R+EHVKHSKCRQDFL RVK NE KEA
Sbjct: 60 KTGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEA 119
Query: 393 XAAGKTVNLKRQPAPPKAAH 452
A GKTV L+RQPAPP AH
Sbjct: 120 KAQGKTVQLRRQPAPPAKAH 139
>SPBC16C6.06 |pep1|vps10|sorting receptor for
CPY|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1466
Score = 27.1 bits (57), Expect = 1.4
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = -2
Query: 184 F*TAPLPLMSTMSPTLYTFMYVESGIVPCVXEPASEQVPWCRGX*PLEFVIFE 26
F T LPL + P + + S I C+ PA+E P++F+ F+
Sbjct: 3 FLTKILPLRGRIFPMFGCLLLIVSLITGCIASPAAEVAETVFDSKPVDFMTFK 55
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 2.4
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = +2
Query: 107 YSALHVHESVQSWRHCRHQRQWCSSKGYATQSIPW 211
+ L H SW + R+ C +KGY PW
Sbjct: 199 FKFLDSHNVNPSWTWEQTVRELCDAKGYYVMKDPW 233
>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 358
Score = 25.4 bits (53), Expect = 4.2
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +3
Query: 333 KCRQDFLKRVKENERLLKEAXAAGKTVNLKRQ 428
K DF KR E +R+ +E A KTV L Q
Sbjct: 181 KKSDDFEKRESEKKRVAQEKVIAAKTVLLALQ 212
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 25.4 bits (53), Expect = 4.2
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 302 DALRYNPSANTLVDNHTES 246
D R N S N ++DNHT++
Sbjct: 29 DPARKNESTNDVIDNHTDT 47
>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
Usp105|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 25.0 bits (52), Expect = 5.5
Identities = 14/56 (25%), Positives = 24/56 (42%)
Frame = +2
Query: 251 RCDCQQACSRKDYTEAHQYPC*ACQALQVQTRLP*ESQRE*EATEGSQXCRQDRQP 418
R + +Q + K+YTE H + ++ +TRLP + + C Q P
Sbjct: 471 RFELEQPLNSKNYTEHHARVSNVMEMIRNKTRLPPRTIMDLTKLYMEYLCHQSNDP 526
>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 906
Score = 25.0 bits (52), Expect = 5.5
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 285 IIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAXAAGK 407
I+ K +NI++EH+ S Q L +E+ EA GK
Sbjct: 808 ILGKSVNIKLEHISDS--MQSVLDNYRESISKQNEAIEMGK 846
>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
6-
hydroxymethyldihydropteridinediphosphokinase/dihydroneop
terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 24.6 bits (51), Expect = 7.3
Identities = 11/43 (25%), Positives = 19/43 (44%)
Frame = -1
Query: 230 VHATCLSMVYFVWHTLLNCTIASDVYNVSNFVHFHVRGERNSS 102
+ + C V H + T+ V N +H++ ERNS+
Sbjct: 83 IASLCFEDVIDTSHVSIKLTLPKCVLRSKNGLHYYAERERNST 125
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 24.6 bits (51), Expect = 7.3
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +1
Query: 316 SMSSTPSADKTSLRE 360
SMSS+P+A +TSLR+
Sbjct: 163 SMSSSPTASRTSLRK 177
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 24.6 bits (51), Expect = 7.3
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 14/93 (15%)
Frame = +3
Query: 135 YKVGDIVDIRGNGAVQKGMPHKV------YHGKTGRVY---NVTAHALGVIVNKRVRGRI 287
Y VGD VD+ NG V M ++ + TG+V N + L ++ +R G
Sbjct: 658 YDVGDRVDVMINGTVTSAMVKEISIMSTEFRLLTGKVIQAPNSLLNTLWILNMRRSDGIA 717
Query: 288 IPKRINIR----VEHVKHSKCR-QDFLKRVKEN 371
P +N++ ++ ++ + + DFLK K +
Sbjct: 718 DPVTVNLKFGTTLQQIEQLRIKIIDFLKEEKRD 750
>SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr
2|||Manual
Length = 212
Score = 24.2 bits (50), Expect = 9.6
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = -1
Query: 254 TESMSSHVVHATCLSMVYFVWHTLLNCTIASDVYNVS 144
TES+++H + A CL ++ H + + V V+
Sbjct: 144 TESLTAHYLFAMCLYRGLYIPHWIYRIAVHKKVIGVA 180
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 24.2 bits (50), Expect = 9.6
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +3
Query: 354 KRVKENERLLKEAXAAGKTVNLKRQPAPPK 443
K +++ ER+ K + NL+R PPK
Sbjct: 83 KILRDEERIKKRKIQKNRAANLQRTLQPPK 112
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 24.2 bits (50), Expect = 9.6
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 219 GRVYNVTAHALGVIVN 266
G+ YN+T+H G VN
Sbjct: 234 GKTYNITSHVSGFYVN 249
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1317
Score = 24.2 bits (50), Expect = 9.6
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = -1
Query: 407 LAGSXGFLQ*PLILFDSLKEVLSALGVLDMLNTDIDALRYNPSANTLVDNHTESM 243
+A S G Q +L +LSA G M D+ + PS+ TL D++TES+
Sbjct: 509 IAKSLGITQ---VLVHKYSSILSAYG---MALADVVSEVQEPSSFTLDDSNTESI 557
>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 24.2 bits (50), Expect = 9.6
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +1
Query: 295 SASISVLSMSSTPSADKTSLRESKRMRGY*RKPXLPARPST*RDSQLPLKLPT 453
SAS S S++S+ S D ++ +R R RKP + +P+ + + P + T
Sbjct: 56 SASRSPESIASSQSNDSAAIPSYRRKRRKVRKPEI-VKPTLRKRGRKPKNIST 107
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,682,344
Number of Sequences: 5004
Number of extensions: 32232
Number of successful extensions: 130
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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