Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_G17
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c... 28 1.0
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 27 3.1
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 27 3.1
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 26 4.1
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 26 5.4
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 26 5.4
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 26 5.4
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra... 26 5.4
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc... 26 5.4
SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomy... 25 7.1
SPAC1F12.04c |||conserved fungal protein|Schizosaccharomyces pom... 25 7.1
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po... 25 7.1
SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 9.4
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 9.4
SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces pom... 25 9.4
>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 716
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 200 YGVWYRLNTDRNFRLYMFKNHNWVLEAYYGL-GEKI 304
YG W + T +F +Y W++E YG+ GE++
Sbjct: 280 YGGWDGVKTFSDFWIYNVDKDLWIMENEYGIPGERV 315
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 26.6 bits (56), Expect = 3.1
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Frame = +1
Query: 496 DEHSKNTDARKLSKQTIEQLKEAANQNSXL---NQKIQALLKK 615
D S TD + SKQTIE L N L N+K Q ++ K
Sbjct: 1314 DSLSNKTDCTESSKQTIETLMNYENDKQTLEGSNKKRQTVVLK 1356
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Frame = +1
Query: 499 EHSKNTDARKLSKQTIEQLKEA----ANQNSXLNQKIQALLKK 615
+HSK + ++S + ++ L++ A QN+ LN+KIQ +K
Sbjct: 211 DHSKVCEKLEVSSRQVQDLEKKLAGLAQQNTELNEKIQLFEQK 253
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 159 FREVLIKFLNVIGFGSFFNIIDRLQSKK 76
FRE F+N S N IDR++ KK
Sbjct: 446 FREKNCAFVNFTSLASAINAIDRIKQKK 473
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 511 NTDARKLSKQTIEQLKEAANQNSXLNQKIQALLK 612
NTD R S EQL + + N+ ++ ++ L+K
Sbjct: 720 NTDCRSPSCSDFEQLGQESENNTSISGRVSKLVK 753
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 505 SKNTDARKLSKQTIEQLKEAANQNSXLNQKIQALLKK 615
S+N D R + EQL+ N+N K+ ALL +
Sbjct: 47 SENIDLRTTAINLEEQLETVQNENEENKTKLAALLNR 83
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 420 PESGSYSNTHLTSPINPGAYSLPSPSHTF 334
P S S S+ +T P +P A S+ H+F
Sbjct: 581 PSSTSRSSVKITGPSSPNARSMAYEQHSF 609
>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
3-phosphatidyltransferase Pis1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 25.8 bits (54), Expect = 5.4
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +2
Query: 254 KNHNWVLEAYYG 289
K HNW+L YYG
Sbjct: 144 KKHNWMLRLYYG 155
>SPBC16A3.08c |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 25.8 bits (54), Expect = 5.4
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 472 DDELLKKFDEH-SKNTDARKLSKQTIEQLKEAANQNSXLNQKIQALLKK 615
++E +K DE+ S+ A K +T+E+L+ A +++ A LKK
Sbjct: 170 EEENVKTLDEYLSERKSAAKPVGRTVEKLENATKVEKSAPEELFASLKK 218
>SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 333
Score = 25.4 bits (53), Expect = 7.1
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +1
Query: 460 LVKPDDELLKKFDEHSKNTDARKLSKQTIEQ--LKEAANQNSXLNQKIQALLKK 615
++K DD + K E K A+KLS+Q +Q LK+ Q Q+ + KK
Sbjct: 174 MLKSDDHMEKVRQELIKEATAKKLSQQAKKQRELKKFGKQVQLAKQEERQREKK 227
>SPAC1F12.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 191
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Frame = +2
Query: 239 RLYMFKNHNWVLEA----YYGLGEKIADQKTRQLDL 334
+L+++ + W+L+ Y L EK D+K QLDL
Sbjct: 106 KLWLWSSRFWLLDTLLTIYQLLREKTEDEKEHQLDL 141
>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 245 YMFKNHNWVLEAYYGLGEKIADQKTRQLDLKVWDGE 352
Y+ K H + A LGE I + +K+W+GE
Sbjct: 131 YVLKGHQSSVWAVLALGEDIFITGSADKLIKIWNGE 166
>SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 430
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +1
Query: 478 ELLKKFDEHSKNTDARKL 531
++LKK DEHS++ AR +
Sbjct: 383 QMLKKADEHSRSIQARSM 400
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = +1
Query: 478 ELLKKFDEHSKNTDARKLSKQTIEQLKEAANQNSXLNQKIQALLKK 615
ELL KFD ++ + S ++++ E QNS ++ + +L++
Sbjct: 605 ELLSKFDSSTRYALYGEWSSTSMKKFPELKLQNSITEKETKGILRR 650
>SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 469 PDDELLKKFDEHSKNTDARKLSKQTIEQLKEA 564
PDD+LL + D HS + +L +Q++ + EA
Sbjct: 282 PDDKLLAESDHHSA-SQIDELVRQSLNVMSEA 312
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,517,178
Number of Sequences: 5004
Number of extensions: 50160
Number of successful extensions: 154
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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