Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_G17
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0765 - 20421813-20423174,20423591-20423771,20423862-204241... 31 0.79
01_06_0597 - 30505800-30506021,30506135-30506566,30506673-30506819 31 1.0
11_05_0010 - 18356835-18357080,18357475-18357672,18357780-183580... 29 3.2
11_05_0007 - 18324969-18325063,18326580-18326745,18327078-183272... 29 4.2
01_06_0599 - 30513858-30514079,30514157-30514588,30514683-30514823 29 4.2
03_05_1014 - 29687343-29687410,29688054-29688191,29689246-296892... 27 9.7
02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298... 27 9.7
>10_08_0765 -
20421813-20423174,20423591-20423771,20423862-20424117,
20424768-20425095,20425218-20426156,20427015-20427761,
20428517-20428789
Length = 1361
Score = 31.1 bits (67), Expect = 0.79
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 451 LFTLVKPDDELLKKFDEHSKNTDA 522
LFT+ KP DE + FD H + DA
Sbjct: 514 LFTIFKPSDEPIDSFDSHDQTDDA 537
>01_06_0597 - 30505800-30506021,30506135-30506566,30506673-30506819
Length = 266
Score = 30.7 bits (66), Expect = 1.0
Identities = 18/36 (50%), Positives = 24/36 (66%)
Frame = -1
Query: 411 GSYSNTHLTSPINPGAYSLPSPSHTFKSS*RVF*SA 304
GSY N LTSPI PGA + + + TF+SS +F +A
Sbjct: 107 GSY-NALLTSPILPGAGAYDAAAETFESSHDLFRAA 141
>11_05_0010 -
18356835-18357080,18357475-18357672,18357780-18358046,
18358870-18359067,18359151-18359417,18359524-18359724,
18359807-18361363,18361499-18361859,18362602-18363467
Length = 1386
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 410 PLSGWSHLAPLVTLCSRWSNLMMNFSKSLMNIQRILMQEN 529
PLSGW+ +P ++ RW N + L I +IL Q++
Sbjct: 731 PLSGWAEFSPF-SILPRWINSSLTNLSYLSIIVKILQQKD 769
>11_05_0007 -
18324969-18325063,18326580-18326745,18327078-18327275,
18327377-18327643,18328070-18328129,18328767-18329033,
18329156-18329359,18329441-18331496,18332517-18333358
Length = 1384
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +2
Query: 410 PLSGWSHLAPLVTLCSRWSNLMMNFSKSLMNIQRILMQEN 529
PLS W +PL TL +W N + L I +IL QE+
Sbjct: 768 PLSVWEEFSPLSTL-PKWINSSLTNLSYLSIIVKILRQED 806
>01_06_0599 - 30513858-30514079,30514157-30514588,30514683-30514823
Length = 264
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = -1
Query: 411 GSYSNTHLTSPINPGAYSLPSPSHTFKSS*RVF*SA 304
GSY N L SPI PGA + + + TF+SS +F +A
Sbjct: 105 GSY-NALLASPILPGAGAYDAAAETFESSHDLFRAA 139
>03_05_1014 - 29687343-29687410,29688054-29688191,29689246-29689294,
29689623-29689728,29690184-29690332,29690840-29690921,
29691308-29691360,29691644-29691729,29691855-29691909,
29692179-29692579,29693564-29693660,29694191-29694322,
29694426-29694476,29694659-29694751,29694917-29694992,
29695711-29695856,29696009-29696043,29696056-29696107,
29696290-29696401,29696617-29696813,29697456-29697560,
29697667-29697819,29698317-29698424,29698608-29698752,
29699374-29699432,29701397-29701441,29701677-29701730,
29701901-29702113,29702873-29702958,29704492-29704572,
29704670-29704729,29705599-29705644,29706212-29706286,
29706376-29706512,29708306-29708366,29708726-29708743,
29709710-29709743,29709811-29709902,29709997-29710029
Length = 1260
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +1
Query: 448 ALFTLVKPDDELLKKFDEHSKNTDARKLSKQTIEQLKEAANQNSXLNQK 594
ALF+++ D E+LK F S++ +ARK SK + Q K + N+K
Sbjct: 1173 ALFSVILID-EVLKFFSRSSRDLNARKASKYKMGQ-KRSKQDGILSNRK 1219
>02_05_0702 - 31027908-31027958,31028062-31029311,31029665-31029842,
31029955-31030017,31031597-31031704,31031772-31031836,
31031928-31032015,31032104-31032157,31032234-31032380,
31033358-31033429,31034077-31034226,31034317-31034430,
31034762-31034875,31035925-31036077,31037437-31037529,
31038202-31038318,31038984-31039086,31039192-31039376,
31039448-31039522,31040451-31040534,31041547-31041588,
31041668-31041847,31042109-31042162,31042239-31042280,
31042869-31042967,31043040-31043174,31043325-31043427,
31045061-31045134,31045227-31045270,31045393-31045471,
31045592-31045705,31045842-31045946,31046027-31046161,
31046447-31046546,31046870-31046883,31046936-31047004,
31047079-31047182,31047299-31047347,31047931-31048023,
31048102-31048210,31048619-31048755,31048851-31048928,
31049015-31049104,31049402-31049467,31049546-31049638,
31049711-31049839,31050024-31050122,31051366-31051512,
31051605-31051910
Length = 2050
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 466 KPDDELLKKFDEHSKNTDARKLSKQTIEQLKEAANQN-SXLNQKIQAL 606
K +DEL + +E K + + +K + Q KE AN N S L Q AL
Sbjct: 963 KENDELFQLKEELEKYKEEAQANKSYMLQYKEIANSNESALKQMESAL 1010
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,798,179
Number of Sequences: 37544
Number of extensions: 277477
Number of successful extensions: 620
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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