Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_G12
(517 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8 prot... 194 2e-49
BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8 pr... 194 2e-49
AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8 pr... 194 2e-49
AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8 pr... 194 2e-49
AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8 pr... 146 4e-35
BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal pr... 36 0.064
CR457284-1|CAG33565.1| 201|Homo sapiens FLJ11749 protein. 29 9.7
BC010108-1|AAH10108.1| 201|Homo sapiens chromatin modifying pro... 29 9.7
AY329087-1|AAQ91196.1| 201|Homo sapiens VPS20 protein. 29 9.7
AK127331-1|BAC86934.1| 178|Homo sapiens , member 1 (TRPV1). pr... 29 9.7
AK021811-1|BAB13901.1| 201|Homo sapiens protein ( Homo sapiens ... 29 9.7
>X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 194 bits (472), Expect = 2e-49
Identities = 96/148 (64%), Positives = 110/148 (74%), Gaps = 1/148 (0%)
Frame = +2
Query: 74 GNVRPYARRGSMS*GVPL-QTPGSVLSVSTPXRSRGGNTKYRALRLDTGNFSWGSECSTR 250
G +PY ++ G P T + T R RGGN KYRALRLD GNFSWGSEC TR
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHT-VRVRGGNKKYRALRLDVGNFSWGSECCTR 74
Query: 251 KTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEE 430
KTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE
Sbjct: 75 KTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEE 134
Query: 431 AIINKKRSQKTARKYLARQRLAKVEGAL 514
I+NKKRS+K +KY R++ AK+ L
Sbjct: 135 EILNKKRSKKIQKKYDERKKNAKISSLL 162
>BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 194 bits (472), Expect = 2e-49
Identities = 96/148 (64%), Positives = 110/148 (74%), Gaps = 1/148 (0%)
Frame = +2
Query: 74 GNVRPYARRGSMS*GVPL-QTPGSVLSVSTPXRSRGGNTKYRALRLDTGNFSWGSECSTR 250
G +PY ++ G P T + T R RGGN KYRALRLD GNFSWGSEC TR
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHT-VRVRGGNKKYRALRLDVGNFSWGSECCTR 74
Query: 251 KTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEE 430
KTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE
Sbjct: 75 KTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEE 134
Query: 431 AIINKKRSQKTARKYLARQRLAKVEGAL 514
I+NKKRS+K +KY R++ AK+ L
Sbjct: 135 EILNKKRSKKIQKKYDERKKNAKISSLL 162
>AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 194 bits (472), Expect = 2e-49
Identities = 96/148 (64%), Positives = 110/148 (74%), Gaps = 1/148 (0%)
Frame = +2
Query: 74 GNVRPYARRGSMS*GVPL-QTPGSVLSVSTPXRSRGGNTKYRALRLDTGNFSWGSECSTR 250
G +PY ++ G P T + T R RGGN KYRALRLD GNFSWGSEC TR
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHT-VRVRGGNKKYRALRLDVGNFSWGSECCTR 74
Query: 251 KTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEE 430
KTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE
Sbjct: 75 KTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEE 134
Query: 431 AIINKKRSQKTARKYLARQRLAKVEGAL 514
I+NKKRS+K +KY R++ AK+ L
Sbjct: 135 EILNKKRSKKIQKKYDERKKNAKISSLL 162
>AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 194 bits (472), Expect = 2e-49
Identities = 96/148 (64%), Positives = 110/148 (74%), Gaps = 1/148 (0%)
Frame = +2
Query: 74 GNVRPYARRGSMS*GVPL-QTPGSVLSVSTPXRSRGGNTKYRALRLDTGNFSWGSECSTR 250
G +PY ++ G P T + T R RGGN KYRALRLD GNFSWGSEC TR
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHT-VRVRGGNKKYRALRLDVGNFSWGSECCTR 74
Query: 251 KTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEE 430
KTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE
Sbjct: 75 KTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEE 134
Query: 431 AIINKKRSQKTARKYLARQRLAKVEGAL 514
I+NKKRS+K +KY R++ AK+ L
Sbjct: 135 EILNKKRSKKIQKKYDERKKNAKISSLL 162
>AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8
protein.
Length = 188
Score = 146 bits (354), Expect = 4e-35
Identities = 74/111 (66%), Positives = 85/111 (76%)
Frame = +2
Query: 182 NTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQ 361
NTK R+ T G C TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQ
Sbjct: 35 NTKIGPRRIHTVRVRGG--C-TRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQ 91
Query: 362 WYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGAL 514
WYESHY LPLGRKKGAKLT EE I+NKKRS+K +KY R++ AK+ L
Sbjct: 92 WYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLL 142
Score = 56.4 bits (130), Expect = 6e-08
Identities = 23/30 (76%), Positives = 27/30 (90%)
Frame = +1
Query: 73 GKRAPIRKKRKYELGRPAANTRLGPQRIHS 162
GKR P KKRKYELGRPAANT++GP+RIH+
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHT 45
>BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal
protein S8 protein.
Length = 80
Score = 36.3 bits (80), Expect = 0.064
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = +2
Query: 413 LTEAEEAIINKKRSQKTARKYLARQRLAKVEGAL 514
LT EE I+NKKRS+K +KY R++ AK+ L
Sbjct: 1 LTPEEEEILNKKRSKKIQKKYDERKKNAKISSLL 34
>CR457284-1|CAG33565.1| 201|Homo sapiens FLJ11749 protein.
Length = 201
Score = 29.1 bits (62), Expect = 9.7
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +2
Query: 392 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR 484
GRKK +++TE ++AI+ K+ + R+Y R
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKR 36
>BC010108-1|AAH10108.1| 201|Homo sapiens chromatin modifying
protein 6 protein.
Length = 201
Score = 29.1 bits (62), Expect = 9.7
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +2
Query: 392 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR 484
GRKK +++TE ++AI+ K+ + R+Y R
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKR 36
>AY329087-1|AAQ91196.1| 201|Homo sapiens VPS20 protein.
Length = 201
Score = 29.1 bits (62), Expect = 9.7
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +2
Query: 392 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR 484
GRKK +++TE ++AI+ K+ + R+Y R
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKR 36
>AK127331-1|BAC86934.1| 178|Homo sapiens , member 1 (TRPV1).
protein.
Length = 178
Score = 29.1 bits (62), Expect = 9.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 323 NAIVVVDATPFRQWYESHYTLPLGRKKGAKLT 418
N I+ V TPF W + H++ P G LT
Sbjct: 5 NPIIAVFRTPFAPWLQFHWSAPFSAWLGTVLT 36
>AK021811-1|BAB13901.1| 201|Homo sapiens protein ( Homo sapiens
cDNA FLJ11749 fis, clone HEMBA1005558, weakly similar to
NUCLEAR PROTEIN SNF7. ).
Length = 201
Score = 29.1 bits (62), Expect = 9.7
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +2
Query: 392 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR 484
GRKK +++TE ++AI+ K+ + R+Y R
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKR 36
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,545,860
Number of Sequences: 237096
Number of extensions: 1614684
Number of successful extensions: 3515
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3511
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4876707572
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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