Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_G10
         (366 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo...    27   0.69 
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    25   4.9  
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    24   8.5  

>SPAC637.11 |suv3||ATP-dependent RNA helicase
           Suv3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 27.5 bits (58), Expect = 0.69
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 195 FRQILFKNIDIG*REIYRGKGIFNILKNYSVFYNIY 302
           F   LF + ++  ++ Y  +   N+ K+ SVF N+Y
Sbjct: 49  FTAYLFASKELSSKQAYLAQDFVNVCKDASVFQNVY 84


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 240 IYRGKGIFNILKNYSVF 290
           +  GKGIFN +KN+  F
Sbjct: 672 VEEGKGIFNNIKNFITF 688


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +3

Query: 45  LGLILGFMVRNMGIYSLNKLLLRYNLR 125
           +GLI GF+ +N+  + L++LL   ++R
Sbjct: 899 IGLIQGFLKKNLEEFGLDELLEDEDIR 925


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 676,492
Number of Sequences: 5004
Number of extensions: 9259
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)