Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_F22
(417 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58682-1|AAB07066.1| 69|Homo sapiens ribosomal protein S28 pro... 59 5e-09
L05091-1|AAC15855.1| 69|Homo sapiens ribosomal protein S28 pro... 59 5e-09
CR457055-1|CAG33336.1| 69|Homo sapiens RPS28 protein. 59 5e-09
BC070218-1|AAH70218.1| 69|Homo sapiens ribosomal protein S28 p... 59 5e-09
BC070217-1|AAH70217.1| 69|Homo sapiens ribosomal protein S28 p... 59 5e-09
BC021239-1|AAH21239.1| 69|Homo sapiens ribosomal protein S28 p... 59 5e-09
BC000354-1|AAH00354.1| 69|Homo sapiens ribosomal protein S28 p... 59 5e-09
AB061846-1|BAB79484.1| 69|Homo sapiens ribosomal protein S28 p... 59 5e-09
U14680-1|AAA73985.1| 1863|Homo sapiens breast and ovarian cancer... 29 8.2
L78833-1|AAC37594.1| 1863|Homo sapiens BRCA1 protein. 29 8.2
DQ478408-3|ABF14462.1| 1822|Homo sapiens early onset breast canc... 29 8.2
DQ190457-3|ABA29229.1| 1822|Homo sapiens breast cancer 1 early o... 29 8.2
DQ190456-3|ABA29226.1| 1863|Homo sapiens breast cancer 1 early o... 29 8.2
DQ190455-3|ABA29223.1| 1863|Homo sapiens breast cancer 1 early o... 29 8.2
DQ190454-3|ABA29220.1| 1863|Homo sapiens breast cancer 1 early o... 29 8.2
DQ190453-3|ABA29217.1| 1863|Homo sapiens breast cancer 1 early o... 29 8.2
DQ190452-3|ABA29214.1| 1863|Homo sapiens breast cancer 1 early o... 29 8.2
DQ190451-3|ABA29211.1| 1863|Homo sapiens breast cancer 1 early o... 29 8.2
DQ190450-3|ABA29208.1| 1863|Homo sapiens breast cancer 1 early o... 29 8.2
BC115037-1|AAI15038.1| 1354|Homo sapiens BRCA1 protein protein. 29 8.2
BC062429-1|AAH62429.1| 440|Homo sapiens BRCA1 protein protein. 29 8.2
BC030969-1|AAH30969.1| 657|Homo sapiens BRCA1 protein protein. 29 8.2
AY751490-1|AAU93634.1| 1841|Homo sapiens breast and ovarian canc... 29 8.2
AY354539-1|AAQ92977.1| 1399|Homo sapiens IRIS protein. 29 8.2
AY304547-1|AAP70031.1| 1141|Homo sapiens breast and ovarian canc... 29 8.2
AY273801-1|AAP12647.1| 1863|Homo sapiens breast cancer 1, early ... 29 8.2
AF005068-1|AAB61673.1| 1792|Homo sapiens breast and ovarian canc... 29 8.2
>U58682-1|AAB07066.1| 69|Homo sapiens ribosomal protein S28
protein.
Length = 69
Score = 59.3 bits (137), Expect = 5e-09
Identities = 25/32 (78%), Positives = 30/32 (93%)
Frame = +2
Query: 134 QCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 229
QCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 26 QCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
Score = 35.1 bits (77), Expect = 0.095
Identities = 23/47 (48%), Positives = 27/47 (57%)
Frame = +1
Query: 76 KPNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPSDHQERERTGP*R 216
+P LARV KVLGRTGSQG ++ RV + D S R GP R
Sbjct: 7 QPIKLARVTKVLGRTGSQG--QCTQVRVEFMDDTSRSIIRNVKGPVR 51
>L05091-1|AAC15855.1| 69|Homo sapiens ribosomal protein S28
protein.
Length = 69
Score = 59.3 bits (137), Expect = 5e-09
Identities = 25/32 (78%), Positives = 30/32 (93%)
Frame = +2
Query: 134 QCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 229
QCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 26 QCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
Score = 35.1 bits (77), Expect = 0.095
Identities = 23/47 (48%), Positives = 27/47 (57%)
Frame = +1
Query: 76 KPNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPSDHQERERTGP*R 216
+P LARV KVLGRTGSQG ++ RV + D S R GP R
Sbjct: 7 QPIKLARVTKVLGRTGSQG--QCTQVRVEFMDDTSRSIIRNVKGPVR 51
>CR457055-1|CAG33336.1| 69|Homo sapiens RPS28 protein.
Length = 69
Score = 59.3 bits (137), Expect = 5e-09
Identities = 25/32 (78%), Positives = 30/32 (93%)
Frame = +2
Query: 134 QCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 229
QCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 26 QCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
Score = 35.1 bits (77), Expect = 0.095
Identities = 23/47 (48%), Positives = 27/47 (57%)
Frame = +1
Query: 76 KPNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPSDHQERERTGP*R 216
+P LARV KVLGRTGSQG ++ RV + D S R GP R
Sbjct: 7 QPIKLARVTKVLGRTGSQG--QCTQVRVEFMDDTSRSIIRNVKGPVR 51
>BC070218-1|AAH70218.1| 69|Homo sapiens ribosomal protein S28
protein.
Length = 69
Score = 59.3 bits (137), Expect = 5e-09
Identities = 25/32 (78%), Positives = 30/32 (93%)
Frame = +2
Query: 134 QCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 229
QCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 26 QCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
Score = 35.1 bits (77), Expect = 0.095
Identities = 23/47 (48%), Positives = 27/47 (57%)
Frame = +1
Query: 76 KPNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPSDHQERERTGP*R 216
+P LARV KVLGRTGSQG ++ RV + D S R GP R
Sbjct: 7 QPIKLARVTKVLGRTGSQG--QCTQVRVEFMDDTSRSIIRNVKGPVR 51
>BC070217-1|AAH70217.1| 69|Homo sapiens ribosomal protein S28
protein.
Length = 69
Score = 59.3 bits (137), Expect = 5e-09
Identities = 25/32 (78%), Positives = 30/32 (93%)
Frame = +2
Query: 134 QCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 229
QCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 26 QCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
Score = 35.1 bits (77), Expect = 0.095
Identities = 23/47 (48%), Positives = 27/47 (57%)
Frame = +1
Query: 76 KPNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPSDHQERERTGP*R 216
+P LARV KVLGRTGSQG ++ RV + D S R GP R
Sbjct: 7 QPIKLARVTKVLGRTGSQG--QCTQVRVEFMDDTSRSIIRNVKGPVR 51
>BC021239-1|AAH21239.1| 69|Homo sapiens ribosomal protein S28
protein.
Length = 69
Score = 59.3 bits (137), Expect = 5e-09
Identities = 25/32 (78%), Positives = 30/32 (93%)
Frame = +2
Query: 134 QCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 229
QCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 26 QCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
Score = 35.1 bits (77), Expect = 0.095
Identities = 23/47 (48%), Positives = 27/47 (57%)
Frame = +1
Query: 76 KPNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPSDHQERERTGP*R 216
+P LARV KVLGRTGSQG ++ RV + D S R GP R
Sbjct: 7 QPIKLARVTKVLGRTGSQG--QCTQVRVEFMDDTSRSIIRNVKGPVR 51
>BC000354-1|AAH00354.1| 69|Homo sapiens ribosomal protein S28
protein.
Length = 69
Score = 59.3 bits (137), Expect = 5e-09
Identities = 25/32 (78%), Positives = 30/32 (93%)
Frame = +2
Query: 134 QCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 229
QCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 26 QCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
Score = 35.1 bits (77), Expect = 0.095
Identities = 23/47 (48%), Positives = 27/47 (57%)
Frame = +1
Query: 76 KPNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPSDHQERERTGP*R 216
+P LARV KVLGRTGSQG ++ RV + D S R GP R
Sbjct: 7 QPIKLARVTKVLGRTGSQG--QCTQVRVEFMDDTSRSIIRNVKGPVR 51
>AB061846-1|BAB79484.1| 69|Homo sapiens ribosomal protein S28
protein.
Length = 69
Score = 59.3 bits (137), Expect = 5e-09
Identities = 25/32 (78%), Positives = 30/32 (93%)
Frame = +2
Query: 134 QCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 229
QCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 26 QCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
Score = 35.1 bits (77), Expect = 0.095
Identities = 23/47 (48%), Positives = 27/47 (57%)
Frame = +1
Query: 76 KPNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPSDHQERERTGP*R 216
+P LARV KVLGRTGSQG ++ RV + D S R GP R
Sbjct: 7 QPIKLARVTKVLGRTGSQG--QCTQVRVEFMDDTSRSIIRNVKGPVR 51
>U14680-1|AAA73985.1| 1863|Homo sapiens breast and ovarian cancer
susceptibility protein.
Length = 1863
Score = 28.7 bits (61), Expect = 8.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 116 RPSTFTTRARTLGLSILACNIELNTINTRAPK 21
+ S F T+A + SI +ELN N++APK
Sbjct: 576 KESAFKTKAEPISSSISNMELELNIHNSKAPK 607
>L78833-1|AAC37594.1| 1863|Homo sapiens BRCA1 protein.
Length = 1863
Score = 28.7 bits (61), Expect = 8.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 116 RPSTFTTRARTLGLSILACNIELNTINTRAPK 21
+ S F T+A + SI +ELN N++APK
Sbjct: 576 KESAFKTKAEPISSSISNMELELNIHNSKAPK 607
>DQ478408-3|ABF14462.1| 1822|Homo sapiens early onset breast cancer
1 protein.
Length = 1822
Score = 28.7 bits (61), Expect = 8.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 116 RPSTFTTRARTLGLSILACNIELNTINTRAPK 21
+ S F T+A + SI +ELN N++APK
Sbjct: 576 KESAFKTKAEPISSSISNMELELNIHNSKAPK 607
>DQ190457-3|ABA29229.1| 1822|Homo sapiens breast cancer 1 early
onset protein.
Length = 1822
Score = 28.7 bits (61), Expect = 8.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 116 RPSTFTTRARTLGLSILACNIELNTINTRAPK 21
+ S F T+A + SI +ELN N++APK
Sbjct: 576 KESAFKTKAEPISSSISNMELELNIHNSKAPK 607
>DQ190456-3|ABA29226.1| 1863|Homo sapiens breast cancer 1 early
onset protein.
Length = 1863
Score = 28.7 bits (61), Expect = 8.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 116 RPSTFTTRARTLGLSILACNIELNTINTRAPK 21
+ S F T+A + SI +ELN N++APK
Sbjct: 576 KESAFKTKAEPISSSISNMELELNIHNSKAPK 607
>DQ190455-3|ABA29223.1| 1863|Homo sapiens breast cancer 1 early
onset protein.
Length = 1863
Score = 28.7 bits (61), Expect = 8.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 116 RPSTFTTRARTLGLSILACNIELNTINTRAPK 21
+ S F T+A + SI +ELN N++APK
Sbjct: 576 KESAFKTKAEPISSSISNMELELNIHNSKAPK 607
>DQ190454-3|ABA29220.1| 1863|Homo sapiens breast cancer 1 early
onset protein.
Length = 1863
Score = 28.7 bits (61), Expect = 8.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 116 RPSTFTTRARTLGLSILACNIELNTINTRAPK 21
+ S F T+A + SI +ELN N++APK
Sbjct: 576 KESAFKTKAEPISSSISNMELELNIHNSKAPK 607
>DQ190453-3|ABA29217.1| 1863|Homo sapiens breast cancer 1 early
onset protein.
Length = 1863
Score = 28.7 bits (61), Expect = 8.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 116 RPSTFTTRARTLGLSILACNIELNTINTRAPK 21
+ S F T+A + SI +ELN N++APK
Sbjct: 576 KESAFKTKAEPISSSISNMELELNIHNSKAPK 607
>DQ190452-3|ABA29214.1| 1863|Homo sapiens breast cancer 1 early
onset protein.
Length = 1863
Score = 28.7 bits (61), Expect = 8.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 116 RPSTFTTRARTLGLSILACNIELNTINTRAPK 21
+ S F T+A + SI +ELN N++APK
Sbjct: 576 KESAFKTKAEPISSSISNMELELNIHNSKAPK 607
>DQ190451-3|ABA29211.1| 1863|Homo sapiens breast cancer 1 early
onset protein.
Length = 1863
Score = 28.7 bits (61), Expect = 8.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 116 RPSTFTTRARTLGLSILACNIELNTINTRAPK 21
+ S F T+A + SI +ELN N++APK
Sbjct: 576 KESAFKTKAEPISSSISNMELELNIHNSKAPK 607
>DQ190450-3|ABA29208.1| 1863|Homo sapiens breast cancer 1 early
onset protein.
Length = 1863
Score = 28.7 bits (61), Expect = 8.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 116 RPSTFTTRARTLGLSILACNIELNTINTRAPK 21
+ S F T+A + SI +ELN N++APK
Sbjct: 576 KESAFKTKAEPISSSISNMELELNIHNSKAPK 607
>BC115037-1|AAI15038.1| 1354|Homo sapiens BRCA1 protein protein.
Length = 1354
Score = 28.7 bits (61), Expect = 8.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 116 RPSTFTTRARTLGLSILACNIELNTINTRAPK 21
+ S F T+A + SI +ELN N++APK
Sbjct: 46 KESAFKTKAEPISSSISNMELELNIHNSKAPK 77
>BC062429-1|AAH62429.1| 440|Homo sapiens BRCA1 protein protein.
Length = 440
Score = 28.7 bits (61), Expect = 8.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 116 RPSTFTTRARTLGLSILACNIELNTINTRAPK 21
+ S F T+A + SI +ELN N++APK
Sbjct: 360 KESAFKTKAEPISSSISNMELELNIHNSKAPK 391
>BC030969-1|AAH30969.1| 657|Homo sapiens BRCA1 protein protein.
Length = 657
Score = 28.7 bits (61), Expect = 8.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 116 RPSTFTTRARTLGLSILACNIELNTINTRAPK 21
+ S F T+A + SI +ELN N++APK
Sbjct: 576 KESAFKTKAEPISSSISNMELELNIHNSKAPK 607
>AY751490-1|AAU93634.1| 1841|Homo sapiens breast and ovarian cancer
susceptibility protein protein.
Length = 1841
Score = 28.7 bits (61), Expect = 8.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 116 RPSTFTTRARTLGLSILACNIELNTINTRAPK 21
+ S F T+A + SI +ELN N++APK
Sbjct: 576 KESAFKTKAEPISSSISNMELELNIHNSKAPK 607
>AY354539-1|AAQ92977.1| 1399|Homo sapiens IRIS protein.
Length = 1399
Score = 28.7 bits (61), Expect = 8.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 116 RPSTFTTRARTLGLSILACNIELNTINTRAPK 21
+ S F T+A + SI +ELN N++APK
Sbjct: 576 KESAFKTKAEPISSSISNMELELNIHNSKAPK 607
>AY304547-1|AAP70031.1| 1141|Homo sapiens breast and ovarian cancer
susceptibility protein protein.
Length = 1141
Score = 28.7 bits (61), Expect = 8.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 116 RPSTFTTRARTLGLSILACNIELNTINTRAPK 21
+ S F T+A + SI +ELN N++APK
Sbjct: 352 KESAFKTKAEPISSSISNMELELNIHNSKAPK 383
>AY273801-1|AAP12647.1| 1863|Homo sapiens breast cancer 1, early
onset protein.
Length = 1863
Score = 28.7 bits (61), Expect = 8.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 116 RPSTFTTRARTLGLSILACNIELNTINTRAPK 21
+ S F T+A + SI +ELN N++APK
Sbjct: 576 KESAFKTKAEPISSSISNMELELNIHNSKAPK 607
>AF005068-1|AAB61673.1| 1792|Homo sapiens breast and ovarian cancer
susceptibility protein splice variant protein.
Length = 1792
Score = 28.7 bits (61), Expect = 8.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 116 RPSTFTTRARTLGLSILACNIELNTINTRAPK 21
+ S F T+A + SI +ELN N++APK
Sbjct: 505 KESAFKTKAEPISSSISNMELELNIHNSKAPK 536
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,576,937
Number of Sequences: 237096
Number of extensions: 936656
Number of successful extensions: 1973
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1973
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3144905170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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