Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_F22
         (417 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024776-21|AAK68479.1|   65|Caenorhabditis elegans Ribosomal pr...    54   6e-08
Z81129-4|CAB03405.1|  330|Caenorhabditis elegans Hypothetical pr...    31   0.25 
AF068713-6|AAC17797.1|  282|Caenorhabditis elegans Serpentine re...    27   5.5  
U28929-1|AAN63410.1|  418|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z83219-5|CAM35834.1|  390|Caenorhabditis elegans Hypothetical pr...    26   9.5  
Z78546-7|CAB01772.1|  375|Caenorhabditis elegans Hypothetical pr...    26   9.5  
AL032657-16|CAJ85780.1|  318|Caenorhabditis elegans Hypothetical...    26   9.5  
AL032657-15|CAA21734.1|  788|Caenorhabditis elegans Hypothetical...    26   9.5  
AL023830-4|CAA19474.1|  375|Caenorhabditis elegans Hypothetical ...    26   9.5  

>AC024776-21|AAK68479.1|   65|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 28 protein.
          Length = 65

 Score = 53.6 bits (123), Expect = 6e-08
 Identities = 25/33 (75%), Positives = 29/33 (87%), Gaps = 1/33 (3%)
 Frame = +2

Query: 134 QCTQVKVEFIGE-TSRQIIRNVKGPVRDGDILT 229
           QCTQV+VEFI +  +R IIRNVKGPVR+GDILT
Sbjct: 21  QCTQVRVEFINDQNNRSIIRNVKGPVREGDILT 53



 Score = 31.1 bits (67), Expect = 0.34
 Identities = 16/21 (76%), Positives = 17/21 (80%)
 Frame = +1

Query: 70  MDKPNVLARVVKVLGRTGSQG 132
           MDK   LARV KV+GRTGSQG
Sbjct: 1   MDKLT-LARVTKVIGRTGSQG 20


>Z81129-4|CAB03405.1|  330|Caenorhabditis elegans Hypothetical
           protein T23F1.6 protein.
          Length = 330

 Score = 31.5 bits (68), Expect = 0.25
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 9   ETRQLWCTCVNCIKLDITSQNG*TQRSCSCREST 110
           ETRQ  C C   ++   + Q    Q SCSC+ ST
Sbjct: 22  ETRQASCGCAQSVQPTCSCQQASQQYSCSCQPST 55


>AF068713-6|AAC17797.1|  282|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 67 protein.
          Length = 282

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -3

Query: 157 LDLHLSTLXPENQYGRVLSRHEQERWVYPFWLVISSLIQ-LTHV 29
           L L + T    NQ+ R+LSR  Q   +    L++ +LI  LTHV
Sbjct: 192 LKLVVCTYFTHNQHARILSRATQIAMIDSTTLILFNLIPILTHV 235


>U28929-1|AAN63410.1|  418|Caenorhabditis elegans Hypothetical
           protein F09C12.2 protein.
          Length = 418

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +2

Query: 143 QVKVEFIGETSRQIIRNVKGP-VRD 214
           Q+ +E++G    Q+IR +K P +RD
Sbjct: 267 QLLIEYLGTPDEQVIRRIKSPSIRD 291


>Z83219-5|CAM35834.1|  390|Caenorhabditis elegans Hypothetical
           protein C31C9.8 protein.
          Length = 390

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 27  CTCVNCIKLDI-TSQNG*TQRSCSCRESTRP 116
           C  V+C+ L   TS+NG   R  SC EST+P
Sbjct: 182 CPVVDCLVLTSWTSRNG---RLMSCMESTKP 209


>Z78546-7|CAB01772.1|  375|Caenorhabditis elegans Hypothetical
           protein T21H8.4 protein.
          Length = 375

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +3

Query: 222 SSLFLNLNVKLGGCDRLLQ-HYCIRLR 299
           ++ FLNL +K   CD LL+ ++C ++R
Sbjct: 74  TNFFLNLMIKPSPCDLLLKTYFCSKIR 100


>AL032657-16|CAJ85780.1|  318|Caenorhabditis elegans Hypothetical
           protein Y47H9C.5b protein.
          Length = 318

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -3

Query: 199 FHVPDDLTAGLPNELDLHLSTLXPENQYGRVLSRHEQERWVYPFW 65
           +H  D +   L N L+  +  + PE     V++R ++E W+  F+
Sbjct: 63  YHNVDYILEFLDNSLNPSVMEMSPEQFEELVMNRKDEETWLVDFF 107


>AL032657-15|CAA21734.1|  788|Caenorhabditis elegans Hypothetical
           protein Y47H9C.5a protein.
          Length = 788

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -3

Query: 199 FHVPDDLTAGLPNELDLHLSTLXPENQYGRVLSRHEQERWVYPFW 65
           +H  D +   L N L+  +  + PE     V++R ++E W+  F+
Sbjct: 533 YHNVDYILEFLDNSLNPSVMEMSPEQFEELVMNRKDEETWLVDFF 577


>AL023830-4|CAA19474.1|  375|Caenorhabditis elegans Hypothetical
           protein T21H8.4 protein.
          Length = 375

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +3

Query: 222 SSLFLNLNVKLGGCDRLLQ-HYCIRLR 299
           ++ FLNL +K   CD LL+ ++C ++R
Sbjct: 74  TNFFLNLMIKPSPCDLLLKTYFCSKIR 100


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,798,229
Number of Sequences: 27780
Number of extensions: 157235
Number of successful extensions: 367
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)