Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_F19
         (404 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    55   5e-09
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac...    26   1.9  
SPAC4G9.02 |||ribonuclease H2 complex subunit|Schizosaccharomyce...    26   2.6  
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    25   3.4  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   4.5  
SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces pombe...    24   7.8  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 54.8 bits (126), Expect = 5e-09
 Identities = 35/95 (36%), Positives = 51/95 (53%)
 Frame = +2

Query: 119 SKIXESXSFEKRPKNFAIGQGHSANSGLXPEFVRWPKYIXHPAPRRLYFSVV*KCPPPNQ 298
           +K  ++  F  RP++F IGQ       L   FV+WP+YI     R++  ++  K PP   
Sbjct: 19  AKTTKNPLFVSRPRSFGIGQDIQPKRDLS-RFVKWPEYIRLQRRRKI-LNLRLKVPPAIA 76

Query: 299 PILPRTLDKTTAKGLFQEFWEKYRPXTEAARKERL 403
               +TLDK TA  +F+    KYRP T A +K+RL
Sbjct: 77  QF-QKTLDKNTATQVFK-LLNKYRPETAAEKKQRL 109


>SPCC777.14 |prp4||serine/threonine protein kinase
           Prp4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 477

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 327 LQLRAFFKNFGRNTGLXLK 383
           L LR   K FGRN GL +K
Sbjct: 243 LNLRDILKKFGRNVGLSIK 261


>SPAC4G9.02 |||ribonuclease H2 complex subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -1

Query: 164 SSLASSRKRXIXRSCLGSTFLTTNWGGGY 78
           +S+ +   R I   C   +  T NWG GY
Sbjct: 217 ASICAKVTRDIQLECARESIRTENWGSGY 245


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -3

Query: 318 SVLGKIG*FGGGHFQTTLKYSLLGAGCXIYLGHLTNSGXSPELAE 184
           SV+GK G F  G F    K   L +G  + +G ++ S   PE +E
Sbjct: 80  SVMGKNGAFVDGEFVERGKSVPLRSGTRVQIGQISFSFLLPEGSE 124


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 119 LGSTFLTTNWGGGYFLPYLL 60
           LGST +T N+GG   +P+LL
Sbjct: 160 LGSTDVTPNFGGVDVIPWLL 179


>SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 285

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +1

Query: 148 EEAKELCHWSGXFSQLGTXSRICKMAQVYPASSAQKAVLQRRLKV 282
           EE  +  HWS  + QLG    + +  +V  A    + VL+++L++
Sbjct: 4   EEHNKSVHWSIVYRQLG---NLLEQYEVEIARLKSQLVLEKKLRI 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,501,798
Number of Sequences: 5004
Number of extensions: 27633
Number of successful extensions: 76
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)