Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_F19
(404 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 59 2e-09
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 59 2e-09
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 39 0.001
12_02_0831 + 23529021-23529162,23529383-23529435,23529727-235310... 30 0.61
12_02_0266 - 16582912-16584918,16585041-16585229 29 1.8
02_01_0503 + 3669758-3670059,3670351-3670870 29 1.8
05_04_0443 - 21283680-21283940,21284044-21284118,21284620-212846... 28 3.2
09_02_0379 - 8210401-8210567,8210944-8213827 27 5.6
01_05_0431 - 22084474-22084635,22084740-22084844,22084931-220850... 27 7.5
12_02_0307 - 17311673-17312032 26 9.9
12_02_0269 - 16617292-16618852,16622763-16623562 26 9.9
06_03_0052 - 16027570-16027617,16027789-16027795,16028103-160283... 26 9.9
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 58.8 bits (136), Expect = 2e-09
Identities = 40/88 (45%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Frame = +2
Query: 143 FEKRPKNFAIGQGHSANSGLXPEFVRWPKYIXHPAPRRLYFSVV*KCPPP-NQPILPRTL 319
FEKRPK F IG L FV+WPK + RR+ + K PP NQ RTL
Sbjct: 25 FEKRPKQFGIGGALPPKKDLH-RFVKWPKVVRIQRQRRILKQRL-KVPPALNQ--FTRTL 80
Query: 320 DKTTAKGLFQEFWEKYRPXTEAARKERL 403
DK A LF+ KYRP +AA+KERL
Sbjct: 81 DKNLATNLFKMLL-KYRPEDKAAKKERL 107
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 58.8 bits (136), Expect = 2e-09
Identities = 40/88 (45%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Frame = +2
Query: 143 FEKRPKNFAIGQGHSANSGLXPEFVRWPKYIXHPAPRRLYFSVV*KCPPP-NQPILPRTL 319
FEKRPK F IG L FV+WPK + RR+ + K PP NQ RTL
Sbjct: 9 FEKRPKQFGIGGALPPKKDLH-RFVKWPKVVRIQRQRRILKQRL-KVPPALNQ--FTRTL 64
Query: 320 DKTTAKGLFQEFWEKYRPXTEAARKERL 403
DK A LF+ KYRP +AA+KERL
Sbjct: 65 DKNLATNLFKMLL-KYRPEDKAAKKERL 91
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 39.1 bits (87), Expect = 0.001
Identities = 28/62 (45%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +2
Query: 143 FEKRPKNFAIGQGHSANSGLXPEFVRWPKYIXHPAPRRLYFSVV*KCPPP-NQPILPRTL 319
FEKRPK F IG L FVRWPK + RR+ + K PP NQ RTL
Sbjct: 26 FEKRPKQFGIGGALPPRKDLH-RFVRWPKAVRIQRQRRVLKQRL-KVPPALNQ--FTRTL 81
Query: 320 DK 325
DK
Sbjct: 82 DK 83
>12_02_0831 +
23529021-23529162,23529383-23529435,23529727-23531074,
23531154-23531324,23531672-23532531
Length = 857
Score = 30.3 bits (65), Expect = 0.61
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Frame = +3
Query: 105 KG*AQARSXNPSLSRRGQRTLPLVRXIQPTRDLXQNL*DGPSISXIQRPEGCTSASSESA 284
+G A+ + P LS + +LP +R P RD+ + D + E +S ++
Sbjct: 426 EGDAKLKDKKPPLSMKRIASLPEMRLYSPQRDVLSEVSDSQIVPKTHDLESGCFSSQQTD 485
Query: 285 PLRI---NQFYPEHWT 323
P I FYP+ T
Sbjct: 486 PFSICTDGSFYPDDIT 501
>12_02_0266 - 16582912-16584918,16585041-16585229
Length = 731
Score = 28.7 bits (61), Expect = 1.8
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 304 NWLIRRGALSDDAEVQPSGRWMXDILGPSY 215
NWL + ++ + E P+ +WM IL SY
Sbjct: 187 NWLKIKNSMGFELETNPNSKWMKHILKLSY 216
>02_01_0503 + 3669758-3670059,3670351-3670870
Length = 273
Score = 28.7 bits (61), Expect = 1.8
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Frame = -1
Query: 233 YTWAILQILXQVPSWLNXPDQ---WQSSLASSRKRXIXRSCLGSTFLTTNWG-GGYFLP- 69
+ W+ ++ Q P W P Q W ++ SR+ R G WG GG P
Sbjct: 104 WNWSPWHVI-QRPWWSPLPGQGIRWWQQVSPSRRAADRR---GRHLACRRWGRGGRRRPH 159
Query: 68 --YLLLRASSAASVEQLVKF 15
YLLL S A V+QL+ F
Sbjct: 160 SSYLLLSFSVLAIVDQLIDF 179
>05_04_0443 -
21283680-21283940,21284044-21284118,21284620-21284649,
21286744-21287247
Length = 289
Score = 27.9 bits (59), Expect = 3.2
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -1
Query: 92 WGGGYFLPYLLLRASSAASVEQLVKFRRXL 3
WG +F+ +L L S +ASV++++ F R L
Sbjct: 147 WGPFFFIVFLGLTLSWSASVKKIIMFTRFL 176
>09_02_0379 - 8210401-8210567,8210944-8213827
Length = 1016
Score = 27.1 bits (57), Expect = 5.6
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 86 GGYFLPYLLLRASSAASVEQLVKFRRXL 3
G + LP+L +A +V++L KFRR L
Sbjct: 6 GQWLLPHLAYPFKTAQNVDKLTKFRRKL 33
>01_05_0431 -
22084474-22084635,22084740-22084844,22084931-22085003,
22085109-22085179,22085429-22085548,22085631-22085715,
22085812-22085867,22085978-22086053,22086546-22086611,
22086843-22087060
Length = 343
Score = 26.6 bits (56), Expect = 7.5
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -3
Query: 309 GKIG*FGGGHFQTTLKYSLLGAGCXIYLGHLTNSGXSPELA 187
GK+G G G + +L+ AGC + + + T S P L+
Sbjct: 51 GKVGFLGLGIMGAPMASNLINAGCDVTVWNRTRSKCDPLLS 91
>12_02_0307 - 17311673-17312032
Length = 119
Score = 26.2 bits (55), Expect = 9.9
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +2
Query: 182 HSANSGLXPEFVRWPKYIXHPAPRRLYFSVV*KCPPPNQP 301
H A++ + + RWP+ HPA + + PP QP
Sbjct: 65 HPAHAQVAVDGARWPRPPRHPARHLTLPLCLRRVPPTQQP 104
>12_02_0269 - 16617292-16618852,16622763-16623562
Length = 786
Score = 26.2 bits (55), Expect = 9.9
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 304 NWLIRRGALSDDAEVQPSGRWMXDILGPSY 215
NWL + ++ + E P+ +WM IL SY
Sbjct: 386 NWLKIKYSMGFELERNPNSKWMKHILKLSY 415
>06_03_0052 -
16027570-16027617,16027789-16027795,16028103-16028341,
16028432-16028566,16028670-16028888
Length = 215
Score = 26.2 bits (55), Expect = 9.9
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = -1
Query: 143 KRXIXRSCLGSTFLTTNWGGGYFLPYLLLRASSAASVEQLV 21
+R + + TF++ N+ GY+LP L+ +S +++V
Sbjct: 149 RRTVEAEGIPYTFVSCNFFAGYYLPTLVQPGASGLPADKVV 189
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,588,936
Number of Sequences: 37544
Number of extensions: 214634
Number of successful extensions: 499
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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