Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_F19
(404 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY089570-1|AAL90308.1| 271|Drosophila melanogaster RE05022p pro... 66 1e-11
AE014298-903|AAF46169.1| 271|Drosophila melanogaster CG3314-PD,... 66 1e-11
AE014298-902|AAN09172.1| 271|Drosophila melanogaster CG3314-PC,... 66 1e-11
AE014298-901|AAN09170.1| 271|Drosophila melanogaster CG3314-PA,... 66 1e-11
X82782-1|CAA58023.1| 271|Drosophila melanogaster ribosomal prot... 65 4e-11
X04132-1|CAA27747.1| 128|Drosophila melanogaster protein ( Dros... 29 1.8
AY865113-1|AAW79535.1| 406|Drosophila melanogaster SR-CIV protein. 27 7.2
>AY089570-1|AAL90308.1| 271|Drosophila melanogaster RE05022p
protein.
Length = 271
Score = 66.5 bits (155), Expect = 1e-11
Identities = 42/87 (48%), Positives = 49/87 (56%)
Frame = +2
Query: 143 FEKRPKNFAIGQGHSANSGLXPEFVRWPKYIXHPAPRRLYFSVV*KCPPPNQPILPRTLD 322
FEKRPKNF IGQ L FVRWPKYI + + + K PPP +TLD
Sbjct: 37 FEKRPKNFGIGQNVQPKRDL-SRFVRWPKYIRVQRQKAVLQKRL-KVPPPIHQ-FSQTLD 93
Query: 323 KTTAKGLFQEFWEKYRPXTEAARKERL 403
KTTA LF + EKYRP + A+K RL
Sbjct: 94 KTTAVKLF-KLLEKYRPESPLAKKLRL 119
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +1
Query: 250 QKAVLQRRLKVPP 288
QKAVLQ+RLKVPP
Sbjct: 71 QKAVLQKRLKVPP 83
>AE014298-903|AAF46169.1| 271|Drosophila melanogaster CG3314-PD,
isoform D protein.
Length = 271
Score = 66.5 bits (155), Expect = 1e-11
Identities = 42/87 (48%), Positives = 49/87 (56%)
Frame = +2
Query: 143 FEKRPKNFAIGQGHSANSGLXPEFVRWPKYIXHPAPRRLYFSVV*KCPPPNQPILPRTLD 322
FEKRPKNF IGQ L FVRWPKYI + + + K PPP +TLD
Sbjct: 37 FEKRPKNFGIGQNVQPKRDL-SRFVRWPKYIRVQRQKAVLQKRL-KVPPPIHQ-FSQTLD 93
Query: 323 KTTAKGLFQEFWEKYRPXTEAARKERL 403
KTTA LF + EKYRP + A+K RL
Sbjct: 94 KTTAVKLF-KLLEKYRPESPLAKKLRL 119
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +1
Query: 250 QKAVLQRRLKVPP 288
QKAVLQ+RLKVPP
Sbjct: 71 QKAVLQKRLKVPP 83
>AE014298-902|AAN09172.1| 271|Drosophila melanogaster CG3314-PC,
isoform C protein.
Length = 271
Score = 66.5 bits (155), Expect = 1e-11
Identities = 42/87 (48%), Positives = 49/87 (56%)
Frame = +2
Query: 143 FEKRPKNFAIGQGHSANSGLXPEFVRWPKYIXHPAPRRLYFSVV*KCPPPNQPILPRTLD 322
FEKRPKNF IGQ L FVRWPKYI + + + K PPP +TLD
Sbjct: 37 FEKRPKNFGIGQNVQPKRDL-SRFVRWPKYIRVQRQKAVLQKRL-KVPPPIHQ-FSQTLD 93
Query: 323 KTTAKGLFQEFWEKYRPXTEAARKERL 403
KTTA LF + EKYRP + A+K RL
Sbjct: 94 KTTAVKLF-KLLEKYRPESPLAKKLRL 119
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +1
Query: 250 QKAVLQRRLKVPP 288
QKAVLQ+RLKVPP
Sbjct: 71 QKAVLQKRLKVPP 83
>AE014298-901|AAN09170.1| 271|Drosophila melanogaster CG3314-PA,
isoform A protein.
Length = 271
Score = 66.5 bits (155), Expect = 1e-11
Identities = 42/87 (48%), Positives = 49/87 (56%)
Frame = +2
Query: 143 FEKRPKNFAIGQGHSANSGLXPEFVRWPKYIXHPAPRRLYFSVV*KCPPPNQPILPRTLD 322
FEKRPKNF IGQ L FVRWPKYI + + + K PPP +TLD
Sbjct: 37 FEKRPKNFGIGQNVQPKRDL-SRFVRWPKYIRVQRQKAVLQKRL-KVPPPIHQ-FSQTLD 93
Query: 323 KTTAKGLFQEFWEKYRPXTEAARKERL 403
KTTA LF + EKYRP + A+K RL
Sbjct: 94 KTTAVKLF-KLLEKYRPESPLAKKLRL 119
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +1
Query: 250 QKAVLQRRLKVPP 288
QKAVLQ+RLKVPP
Sbjct: 71 QKAVLQKRLKVPP 83
>X82782-1|CAA58023.1| 271|Drosophila melanogaster ribosomal protein
L7a protein.
Length = 271
Score = 64.9 bits (151), Expect = 4e-11
Identities = 41/87 (47%), Positives = 48/87 (55%)
Frame = +2
Query: 143 FEKRPKNFAIGQGHSANSGLXPEFVRWPKYIXHPAPRRLYFSVV*KCPPPNQPILPRTLD 322
FEKRPKNF IGQ L FVRWPKYI + + + K PPP +TLD
Sbjct: 37 FEKRPKNFGIGQNVQPKRDL-SRFVRWPKYIRVQRQKAVLQKRL-KVPPPIHQ-FSQTLD 93
Query: 323 KTTAKGLFQEFWEKYRPXTEAARKERL 403
KTTA LF + EKYRP + A+ RL
Sbjct: 94 KTTAVKLF-KLLEKYRPESALAKNVRL 119
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +1
Query: 250 QKAVLQRRLKVPP 288
QKAVLQ+RLKVPP
Sbjct: 71 QKAVLQKRLKVPP 83
>X04132-1|CAA27747.1| 128|Drosophila melanogaster protein (
Drosophila retrotransposon412 genome. ).
Length = 128
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Frame = +2
Query: 89 PNWWSKRLS-PSKIXESXSFEKRPKNFAIGQGHSANSGLXPEFVRWPKYIXHPAPRRLYF 265
P WSK L +++ +++ K + + HS N P PKY PAP
Sbjct: 36 PPVWSKALKLHAELDHLLQYQQELKTHKLEKTHSDNIKNIPTINEVPKYQACPAPAPALT 95
Query: 266 SVV*KCPP 289
CPP
Sbjct: 96 KPKKSCPP 103
>AY865113-1|AAW79535.1| 406|Drosophila melanogaster SR-CIV protein.
Length = 406
Score = 27.5 bits (58), Expect = 7.2
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +1
Query: 151 EAKELCHWSGXFSQLGTXSRICKMAQVY 234
E++++C W+ S LGT R+ +A +
Sbjct: 135 ESEDMCGWTAELSYLGTWKRVSTVADFH 162
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,826,615
Number of Sequences: 53049
Number of extensions: 332731
Number of successful extensions: 1113
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1191504915
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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