Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_F19
         (404 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   2.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   4.0  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   5.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       20   9.3  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +3

Query: 201 LXQNL*DGPSISXIQRPEGCTSASSESAPLRINQFYPEHWTRL 329
           L +NL  G SIS   +PE     ++E + +  +    + +TR+
Sbjct: 538 LSENLSSGLSISDSTKPETSKGINAEPSNIEESNNMTDSFTRI 580


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 241 SSAQKAVLQRRLKVPPSESTNFTQNTG 321
           S+   AV +++ +VP + S+N   N+G
Sbjct: 517 STCSLAVAKQQNQVPLTSSSNVNNNSG 543


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 324 RLQLRAFFKNFGRNTGLXLKQP 389
           R+   A +  +GRN GL  + P
Sbjct: 412 RISRVAAYNTYGRNAGLRYRGP 433


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 176 QGHSANSGLXP 208
           QGH+ +SGL P
Sbjct: 206 QGHNPSSGLQP 216


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,061
Number of Sequences: 438
Number of extensions: 2084
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)