Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_F18
(453 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 2.3
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 26 2.3
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S... 26 3.1
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 25 4.1
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 25 5.4
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac... 25 5.4
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb... 25 7.2
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 25 7.2
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 24 9.5
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 24 9.5
>SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 178
Score = 26.2 bits (55), Expect = 2.3
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 7/47 (14%)
Frame = -2
Query: 413 ERSCNPVKRFIVKSLGLSATFGPVFLIINGNS-------GMMYISCT 294
+++ +K+F + SLGL+ PV L+++ M++++CT
Sbjct: 31 KKAIGNIKKFSIGSLGLTYMISPVMLLLDAGGLSLGTRMSMVFLACT 77
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 26.2 bits (55), Expect = 2.3
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +1
Query: 4 RLACRLSRLDVSCYSEDN*IYLFGVFNRLQSRTKMETFK 120
R+A R + ++C S DN IY++ + + + + K + FK
Sbjct: 444 RVALRPNGKSIACQSLDNCIYVYSAYEKYR-QNKKKVFK 481
>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 25.8 bits (54), Expect = 3.1
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 82 NRLQSRTKMETFKFSNDKKHVTEAVFNGSVFYEVYKY 192
N++++ M T F+ND++ + N SV Y+ Y Y
Sbjct: 74 NKIKNLFTMFTCCFANDEEEIWGEETNESVVYKEYTY 110
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 25.4 bits (53), Expect = 4.1
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 313 IPELPLMIKKTGPNVALKPSDFTINRLTGLQLRSPSKTXGA 435
+ E P + G NVA P DF+++++ L L +PS A
Sbjct: 398 LSETPTPVSGNG-NVADAPPDFSLSQVMPLDLIAPSMQPSA 437
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 25.0 bits (52), Expect = 5.4
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -3
Query: 244 RPWPIL*QHFLFPSGNQRI 188
RP P+ QH+LFPSG+ I
Sbjct: 371 RPTPL--QHYLFPSGSDGI 387
>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 585
Score = 25.0 bits (52), Expect = 5.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 351 ERGAQAKRFHNKSFDGITAAFAFQNRRGFPQI 446
E A+RFH++S D A ++R FP +
Sbjct: 503 EPSLDAERFHSRSVDASPKAVRRESRSFFPSL 534
>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1095
Score = 24.6 bits (51), Expect = 7.2
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = +3
Query: 66 FIWCVQQTTEPDKNGDIQIFE 128
FI VQQ E KNGDI I E
Sbjct: 809 FISRVQQREEEAKNGDIDIEE 829
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 24.6 bits (51), Expect = 7.2
Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +2
Query: 107 WRHSN-FRMIKNMSPKLYLTGQCSMKF 184
WR + F ++ + PKL+LTG ++ F
Sbjct: 1183 WRAAGKFELLDRILPKLFLTGHKTLMF 1209
>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 690
Score = 24.2 bits (50), Expect = 9.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 61 IYLFGVFNRLQSRTKMETFKFSNDKK 138
I L F Q +T + + KF+NDKK
Sbjct: 665 ICLLAEFKVKQEKTPLPSSKFNNDKK 690
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 24.2 bits (50), Expect = 9.5
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 337 KKTGPNVALKPSDFTINRLTGLQL 408
K P AL P DF NRLT L++
Sbjct: 737 KSESPVWALNPDDFDQNRLTLLRV 760
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,949,343
Number of Sequences: 5004
Number of extensions: 40244
Number of successful extensions: 124
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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