Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_F16
         (471 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal prot...   163   6e-41
Z82051-6|CAB04821.1|  354|Caenorhabditis elegans Hypothetical pr...    28   3.9  

>U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 23 protein.
          Length = 140

 Score =  163 bits (396), Expect = 6e-41
 Identities = 75/87 (86%), Positives = 80/87 (91%)
 Frame = +1

Query: 163 IKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGV 342
           I+GRLNRLP+AG GDM V +VKKGKPELRKKV+  VVIRQRK FRR+DG FIYFEDNAGV
Sbjct: 45  IRGRLNRLPSAGVGDMFVCSVKKGKPELRKKVLQGVVIRQRKQFRRKDGTFIYFEDNAGV 104

Query: 343 IVNNKGEMKGSAITGPVAKECADLWPR 423
           IVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 105 IVNNKGEMKGSAITGPVAKECADLWPR 131



 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 18/22 (81%), Positives = 21/22 (95%)
 Frame = +3

Query: 96  GAVINCADNTGAKNLYVIAVQG 161
           GAV+NCADNTGAKNL+VI+V G
Sbjct: 23  GAVMNCADNTGAKNLFVISVYG 44



 Score = 29.1 bits (62), Expect = 1.7
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = +2

Query: 56  AGAKFRISLGLPXGS 100
           +GAKFRISLGLP G+
Sbjct: 10  SGAKFRISLGLPVGA 24


>Z82051-6|CAB04821.1|  354|Caenorhabditis elegans Hypothetical
           protein T23D5.9 protein.
          Length = 354

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 348 DYDTRIVLKVYKYSITPSERFPL 280
           DY +  V K+Y YSIT   RFP+
Sbjct: 162 DYMSEPVQKMYNYSITSLPRFPI 184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,947,839
Number of Sequences: 27780
Number of extensions: 229906
Number of successful extensions: 524
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)