Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_F08
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    43   3e-05
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    29   0.46 
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr...    26   3.3  
SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp...    25   10.0 
SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta 5-->4-i...    25   10.0 

>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
 Frame = +2

Query: 206 FRGVPYAKQPVGELRFKELQPAEPWTDYL-DATEEGPVCYQT--DVLYGSLMKP-HGMNE 373
           F G+ YAK PVG+LR++     E   DY  D  +   +C Q   +     +  P    +E
Sbjct: 21  FTGIRYAKPPVGKLRWRRPVTLEDGYDYSGDYNQFKTICPQPFYNNRKNQVRNPDFKYDE 80

Query: 374 ACIYANIHVPLYALPAAGETPTKPGLPILVFIH 472
            C++ NI VP      AGE P + G P+L FIH
Sbjct: 81  DCLFLNIWVP------AGEKPAE-GWPVLYFIH 106


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 29.1 bits (62), Expect = 0.46
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 281 TDYLDATEEGPVCYQTD-VLYGSLMKPHGMNEACIYANIHVPLYA 412
           TD  D +++  V   TD +LY   + PH      +Y + H P+YA
Sbjct: 800 TDIYDTSDKHRVPAWTDRILYRGELVPHSYQSVPLYYSDHRPIYA 844


>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 591

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = -2

Query: 200 RIKCLLPPGDYGHTPSLTPSARPHCTXEGGDAA 102
           ++    PPGD  HTP      R  C   G + A
Sbjct: 407 KLNTKFPPGDQLHTPEANAFLRDLCAKHGVECA 439


>SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 230 QPVGELRFKELQPAEPWTDYLDATEEGPVCY 322
           QP+G  R  +L  A P+T++ ++ E G + +
Sbjct: 290 QPLGLFRIHKLPLALPFTNHANSNEAGDLSF 320


>SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta
           5-->4-isomerase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 340

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 74  WA**GHIQAQQRRRPRSCNVVAQTESGWVC 163
           WA  GH+     + PR   ++  T + WVC
Sbjct: 254 WAHAGHVPPYIIKFPRPVGMLLATAAEWVC 283


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,400,725
Number of Sequences: 5004
Number of extensions: 49865
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)