Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP13_F_F08
         (558 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0342 + 16963528-16963598,16963668-16964235,16964350-169647...    31   0.62 
05_02_0038 + 5890103-5890522,5891442-5891515,5891605-5891680,589...    28   4.4  
10_08_0371 + 17265691-17265788,17265873-17265971,17266586-172666...    28   5.8  
06_02_0013 - 10581449-10585105                                         28   5.8  
11_04_0039 + 12679350-12680057,12680136-12680582,12680670-126815...    27   7.7  
03_06_0387 + 33558592-33558840,33559171-33559262,33559349-335594...    27   7.7  

>07_03_0342 +
           16963528-16963598,16963668-16964235,16964350-16964760,
           16964848-16965051,16968663-16969032,16972466-16972601,
           16972680-16972779,16972933-16973190,16973276-16973314,
           16973420-16973458
          Length = 731

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = +2

Query: 98  AQQRRRPRSCNVVAQTESGWVCGRSRRAEASTLYASFRGVPYAKQPVGELRFKE 259
           + + R PR+ N + +  S  +CG   R + S L   F+ VP A++ +  L FKE
Sbjct: 8   SSRARTPRTGNKIPKERS--ICGVIGRQKFSILQDDFKLVPAAEKDIAWLTFKE 59


>05_02_0038 +
           5890103-5890522,5891442-5891515,5891605-5891680,
           5891892-5891959,5892189-5892312,5892714-5892812,
           5893576-5893677,5893759-5893895,5894068-5894149,
           5894668-5894730,5895680-5895727,5895833-5895895,
           5896055-5896108,5896190-5896294
          Length = 504

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = -3

Query: 418 RQGVQRHMYIGVDACLIHAVRFHQTSIKNVCLVAN-WTFLGGI*VVGPWLCWL*FLKSKF 242
           R G+ + + + + + L+ AV  H+  +   C +   W FLG I +  P +    +LKSKF
Sbjct: 410 RNGISKEVAVLI-SFLVSAV-LHEICVAVPCRILKFWAFLG-IMLQIPLIVLTAYLKSKF 466

Query: 241 SDWLLG 224
            D ++G
Sbjct: 467 RDTMVG 472


>10_08_0371 +
           17265691-17265788,17265873-17265971,17266586-17266628,
           17267250-17267321,17267400-17267495,17267609-17267842,
           17267914-17268097,17268247-17268358,17268447-17268533,
           17268703-17268841,17269628-17269718,17270045-17270154,
           17270309-17270413,17270982-17271055,17271379-17271454,
           17271786-17272022,17272419-17272490,17273082-17273153,
           17273240-17273304,17273306-17273383,17273384-17273486,
           17273769-17273858,17274873-17274980,17275063-17275113,
           17276126-17276203,17276284-17276346,17276944-17277140,
           17277243-17277312,17277640-17277828
          Length = 1030

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 385 RQYTCAFVRPAGSW*DAYEAWSSNISLYS 471
           R++TC +V    SW D   A++S  SL+S
Sbjct: 633 RKHTCTYVVQLDSWRDLTRAFASGRSLFS 661


>06_02_0013 - 10581449-10585105
          Length = 1218

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +2

Query: 212 GVPYAK-QPVGELRFKELQPAEPWTDYLDATEEGPVCYQTDVLY 340
           G  +AK QP GE +    + AEP +D+  A  +  +C  TDV+Y
Sbjct: 454 GESHAKNQPSGECQSANSEEAEPDSDHPSAGYQQSMC-STDVVY 496


>11_04_0039 +
           12679350-12680057,12680136-12680582,12680670-12681556,
           12681635-12681805,12681872-12682160,12682390-12682428
          Length = 846

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 158 VCGRSRRAEASTLYASFRGVPYAKQPVGELRFKE 259
           +CG   R + S L   F+ VP A++ +  L FKE
Sbjct: 49  ICGVIGRQKFSILQDDFKLVPAAEKDIASLTFKE 82


>03_06_0387 +
           33558592-33558840,33559171-33559262,33559349-33559406,
           33559515-33559580,33559666-33559788
          Length = 195

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 108 VAALXRAMWSRRRSQAGCVAVVAGRKQ 188
           V++L    W RR  +A C A V GR+Q
Sbjct: 31  VSSLFAGDWRRRPRRAACTARVRGRRQ 57


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,753,743
Number of Sequences: 37544
Number of extensions: 377802
Number of successful extensions: 984
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)