Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP13_F_F07
(643 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac... 28 1.00
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 4.0
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 26 4.0
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo... 26 5.3
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 26 5.3
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 25 7.0
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 25 7.0
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 25 7.0
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 25 7.0
SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces po... 25 9.3
>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 340
Score = 28.3 bits (60), Expect = 1.00
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -2
Query: 285 LSISHHCSYFNNFTLTKNESC 223
++I HC + NFT+ K E C
Sbjct: 293 VTIQPHCGVYTNFTVAKTEEC 313
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.2 bits (55), Expect = 4.0
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 6/57 (10%)
Frame = +1
Query: 301 LIKISYCFKNSVNL----AVNRTFQYNIYNYDTWINLQ--VNNTIEQILDFTEDSDK 453
L ++SYCFK+ V+L +++RT Q ++ N D ++NL V N + +L E + K
Sbjct: 3734 LPELSYCFKHLVSLQSLKSISRT-QVDLTN-DEFLNLMNFVLNLFDSLLSSIETATK 3788
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 26.2 bits (55), Expect = 4.0
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -1
Query: 493 ISCYVNSCRETQGAY 449
IS YV +CRE QGA+
Sbjct: 587 ISSYVTNCREEQGAF 601
>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 350
Score = 25.8 bits (54), Expect = 5.3
Identities = 7/17 (41%), Positives = 14/17 (82%)
Frame = -1
Query: 199 VLANFRIYLNWVSIYWL 149
V+AN ++Y +W+ ++WL
Sbjct: 98 VIANHQLYSDWMYVWWL 114
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 25.8 bits (54), Expect = 5.3
Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Frame = +1
Query: 247 EIIKIRTMMGYRKILLLMLIKISYCFKNSVNL----AVNRTFQYNIYNYDT-WINLQVNN 411
E++K++ + R + L+ +S +NS L ++R ++ Y T W+ + N+
Sbjct: 569 EVVKVKNRIDGRFYAVKKLVLLSDDKENSRILREVMTLSRLHHEHVVRYYTAWVETEAND 628
Query: 412 TIEQILDFTEDSDKL 456
T+ +I+ + DS+ L
Sbjct: 629 TVTEII--SSDSESL 641
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 25.4 bits (53), Expect = 7.0
Identities = 8/37 (21%), Positives = 21/37 (56%)
Frame = -1
Query: 199 VLANFRIYLNWVSIYWLHIFFDLFV*SSVHKIYRYHL 89
++ I + S+YW+ ++ D++V S + + +Y +
Sbjct: 201 MIKGISIVIALCSVYWISLYKDVYVVSEIFDMIQYEV 237
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 25.4 bits (53), Expect = 7.0
Identities = 8/37 (21%), Positives = 21/37 (56%)
Frame = -1
Query: 199 VLANFRIYLNWVSIYWLHIFFDLFV*SSVHKIYRYHL 89
++ I + S+YW+ ++ D++V S + + +Y +
Sbjct: 201 MIKGISIVIALCSVYWISLYKDVYVVSEIFDMIQYEV 237
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 25.4 bits (53), Expect = 7.0
Identities = 8/37 (21%), Positives = 21/37 (56%)
Frame = -1
Query: 199 VLANFRIYLNWVSIYWLHIFFDLFV*SSVHKIYRYHL 89
++ I + S+YW+ ++ D++V S + + +Y +
Sbjct: 173 MIKGISIVIALCSVYWISLYKDVYVVSEIFDMIQYEV 209
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 25.4 bits (53), Expect = 7.0
Identities = 8/37 (21%), Positives = 21/37 (56%)
Frame = -1
Query: 199 VLANFRIYLNWVSIYWLHIFFDLFV*SSVHKIYRYHL 89
++ I + S+YW+ ++ D++V S + + +Y +
Sbjct: 201 MIKGISIVIALCSVYWISLYKDVYVVSEIFDMIQYEV 237
>SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 460
Score = 25.0 bits (52), Expect = 9.3
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -3
Query: 182 DLFELGIYLLVTYFFRLICIVI 117
DL +LGI +L +F L+C+ +
Sbjct: 419 DLQKLGISILFVFFIILVCLAV 440
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,478,118
Number of Sequences: 5004
Number of extensions: 47571
Number of successful extensions: 122
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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